| ID | SAVERM_5458
| Type | CDS
|
| From | 6620398
| nt length | 2250
|
| To | 6622647
| aa length | 749
|
| Gene | pbp10
| pI | 9.45
|
| Definition | putative penicillin-binding protein
| M.W (Da) | 81612
|
| Note | PF00905: Penicillin binding protein transpeptidase domain
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | cell wall
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2608 pbp2 penicillin binding protein | 1228 | 0.0e+00
|
| sgr | SGR_4934 putative penicillin-binding protein | 1100 | 0.0e+00
|
| sam | SAM23877_2654 Penicillin binding protein | 1227 | 0.0e+00
|
| scab | SCAB60051 putative penicillin-binding protein | 1261 | 0.0e+00
|
| bsub | BG11678 pbpA, yqgF; penicillin-binding protein 2A | 122 | 5.8e-29
|
| ecoli | gi|16128618 cell elongation, e phase; peptidoglycan synthetase; penicillin-binding protein 2 [Escherichia coli K12] | 206 | 3.5e-54
|
| paer | PA4003 [gene=pbpA] [prot=penicillin-binding protein 2] [comment=PA4003] | 192 | 1.2e-49
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Transpeptidase | 1 | Penicillin binding protein transpeptidase domain | 298-658 | 297.9 | 7.4e-89
|
| PBP_dimer | 1 | Penicillin-binding Protein dimerisation domain | 60-246 | 134.9 | 3.4e-39
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_099499271.1 | MULTISPECIES: penicillin-binding protein 2 [Streptomyces] >g...
| 3312 | 0.0e+00 |
| WP_212672614.1 | penicillin-binding protein 2 [Streptomyces sp. A2-16] >gb
| 3287 | 0.0e+00 |
| WP_189286915.1 | penicillin-binding protein 2 [Streptomyces fumigatisclerotic...
| 3281 | 0.0e+00 |
| WP_053846485.1 | penicillin-binding protein 2 [Streptomyces sp. NRRL B-24085]
| 3272 | 0.0e+00 |
| WP_153290605.1 | penicillin-binding protein 2 [Streptomyces fagopyri] >gb
| 3269 | 0.0e+00 |
| NEB01758.1 | penicillin-binding protein 2 [Streptomyces sp. SID13726]
| 3263 | 0.0e+00 |
| WP_126271889.1 | penicillin-binding protein 2 [Streptomyces aquilus] >gb
| 3259 | 0.0e+00 |
| WP_148013961.1 | penicillin-binding protein 2 [Streptomyces sp. me109] >lcl
| 3255 | 0.0e+00 |
|
| 3254 | 0.0e+00 |
| NUO45144.1 | penicillin-binding protein 2 [Streptomyces sp.] >gb
| 3253 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.3357 | Seems to have an uncleavable N-term signal seq
|