| ID | SAVERM_5468
| Type | CDS
|
| From | 6638084
| nt length | 255
|
| To | 6638338
| aa length | 84
|
| Gene | rpmA
| pI | 12.03
|
| Definition | putative ribosomal protein L27
| M.W (Da) | 8877
|
| Note | PF01016: Ribosomal L27 protein
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2596 50S ribosomal protein L27 | 158 | 3.0e-53
|
| sgr | SGR_4954 putative 5oS ribosomal protein L27 | 157 | 1.0e-52
|
| sam | SAM23877_2644 50S ribosomal subunit protein L27 | 158 | 3.0e-53
|
| scab | SCAB60161 putative ribosomal protein L27 | 160 | 5.0e-54
|
| sace | SACE_1415 50S ribosomal protein L27 | 129 | 6.0e-42
|
| nfar | nfa13540 rpmA ribosomal protein L27 | 144 | 1.2e-36
|
| mtub | gi|15609578 50S ribosomal protein L27 [Mycobacterium tuberculosis H37Rv] | 132 | 3.4e-33
|
| cglu | gi|19553561 COG0211:Ribosomal protein L27 [Corynebacterium glutamicum] | 128 | 4.5e-32
|
| bsub | BG10335 rpmA; 50S ribosomal protein L27 | 92 | 2.7e-21
|
| ecoli | gi|16131075 50S ribosomal protein L27 [Escherichia coli K12] | 96 | 3.5e-22
|
| paer | PA4567 [gene=rpmA] [prot=50S ribosomal protein L27] [comment=PA4567] | 103 | 2.4e-24
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L27 | 1 | Ribosomal L27 protein | 2-80 | 123.9 | 1.8e-36
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_055555987.1 | MULTISPECIES: 50S ribosomal protein L27 [Streptomyces] >gb
| 423 | 4.9e-53 |
| WP_062773847.1 | MULTISPECIES: 50S ribosomal protein L27 [Streptomyces] >gb
| 421 | 1.2e-52 |
| WP_127912897.1 | 50S ribosomal protein L27 [Streptomyces huasconensis] >lcl
| 420 | 1.5e-52 |
| WP_030564037.1 | MULTISPECIES: 50S ribosomal protein L27 [Streptomyces] >lcl
| 420 | 1.6e-52 |
| WP_207822891.1 | 50S ribosomal protein L27 [Streptomyces sp. VRA16 Mangrove s...
| 419 | 1.9e-52 |
| WP_028802588.1 | MULTISPECIES: 50S ribosomal protein L27 [Streptomyces] >gb
| 419 | 1.9e-52 |
| WP_150167684.1 | MULTISPECIES: 50S ribosomal protein L27 [Streptomyces] >gb
| 417 | 4.2e-52 |
| WP_030362615.1 | MULTISPECIES: 50S ribosomal protein L27 [Streptomyces] >gb
| 417 | 4.5e-52 |
| WP_150218679.1 | 50S ribosomal protein L27 [Streptomyces venezuelae] >gb
| 416 | 5.2e-52 |
| WP_026245994.1 | MULTISPECIES: 50S ribosomal protein L27 [unclassified Strept...
| 416 | 6.3e-52 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3283 | Seems to have no N-terminal signal seq.
|