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IDSAVERM_5679 TypeCDS
From6868347 nt length1170
To6869516 aa length389
Genesig47 pI4.69
Definitionputative RNA polymerase sigma factor M.W (Da)43188
Notesilimar to SCO2465:hrdA, sigma-70 family, PF04539: Sigma-70 region 3 AseI frg.B
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO2465 RNA polymerase principal sigma factor5510.0e+00
sgrSGR_5067 putative RNA polymerase principal sigma factor5830.0e+00
samSAM23877_2520 RNA polymerase principal sigma factor HrdA5690.0e+00
scabSCAB62501 putative RNA polymerase sigma factor6200.0e+00

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r31Sigma-70 region 3235-31195.02e-27

Sigma70_r21Sigma-70 region 2156-22583.27.3e-24

Sigma70_r41Sigma-70, region 4324-37779.49.5e-23

Sigma70_r1_21Sigma-70 factor, region 1.291-12459.81.8e-16

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_202497524.1 RNA polymerase sigma factor [Streptomyces sp. SID5469] 16690.0e+00
15460.0e+00
WP_237695783.1 RNA polymerase sigma factor [Streptomyces muensis] 15440.0e+00
WP_041819983.1 sigma-70 family RNA polymerase sigma factor [Streptomyces da... 15400.0e+00
CCK30237.1 RNA polymerase principal sigma factor hrdA [Streptomyces davaone... 15390.0e+00
WP_048584420.1 RNA polymerase sigma factor [Streptomyces viridochromogenes]... 15390.0e+00
WP_208778801.1 RNA polymerase sigma factor [Streptomyces griseorubiginosus]... 15380.0e+00
AYC41439.1 RNA polymerase principal sigma factor HrdA [Streptomyces griseoru... 15350.0e+00
15350.0e+00
WP_028809407.1 RNA polymerase sigma factor [Streptomyces sp. 351MFTsu5.1] 15350.0e+00

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.1803 Seems to have no N-terminal signal seq.