| ID | SAVERM_5680
| Type | CDS
|
| From | 6871484
| nt length | 1929
|
| To | 6869556
| aa length | 642
|
| Gene |
| pI | 6.28
|
| Definition | putative ABC transporter ATP-binding protein
| M.W (Da) | 69377
|
| Note | PF00005: ABC transporter
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2464 putative ABC transporter | 1157 | 0.0e+00
|
| sgr | SGR_5068 putative ABC transporter ATPase and permease component | 1023 | 0.0e+00
|
| sam | SAM23877_2517 conserved membrane protein of unknown function | 1169 | 0.0e+00
|
| scab | SCAB62511 putative ABC transporter ATP-binding protein | 1162 | 0.0e+00
|
| nfar | nfa2640 ABC transporter | 750 | 0.0e+00
|
| mtub | gi|15608412 PROBABLE DRUGS-TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER [Mycobacterium tuberculosis H37Rv] | 686 | 0.0e+00
|
| cglu | gi|19552189 COG1132:ABC-type multidrug/protein/lipid transport system, ATPase component [Corynebacterium glutamicum] | 688 | 0.0e+00
|
| bsub | BG11850 yfiC; multidrug resistance protein | 445 | 4.3e-126
|
| ecoli | gi|16128881 ATP-binding transport protein; multicopy suppressor of htrB [Escherichia coli K12] | 311 | 1.1e-85
|
| paer | PA4997 [gene=msbA] [prot=transport protein MsbA] [comment=PA4997] | 306 | 3.7e-84
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ABC_membrane | 1 | ABC transporter transmembrane region | 42-351 | 186.1 | 9.6e-55
|
| ABC_tran | 1 | ABC transporter | 414-563 | 106.7 | 1.2e-30
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_094217938.1 | ABC transporter ATP-binding protein/permease [Streptomyces d...
| 2819 | 0.0e+00 |
| WP_097254835.1 | ABC transporter ATP-binding protein/permease [Streptomyces s...
| 2815 | 0.0e+00 |
| WP_071367260.1 | ABC transporter ATP-binding protein/permease [Streptomyces c...
| 2807 | 0.0e+00 |
| WP_148013846.1 | ABC transporter ATP-binding protein/permease [Streptomyces s...
| 2798 | 0.0e+00 |
| WP_043440060.1 | ABC transporter ATP-binding protein/permease [Streptomyces n...
| 2793 | 0.0e+00 |
| WP_189837989.1 | ABC transporter ATP-binding protein/permease [Streptomyces u...
| 2786 | 0.0e+00 |
| WP_055705984.1 | ABC transporter ATP-binding protein/permease [Streptomyces p...
| 2786 | 0.0e+00 |
| WP_215164318.1 | ABC transporter ATP-binding protein/permease [Streptomyces s...
| 2785 | 0.0e+00 |
| WP_161241347.1 | ABC transporter ATP-binding protein/permease [Streptomyces s...
| 2784 | 0.0e+00 |
| WP_053190579.1 | ABC transporter ATP-binding protein/permease [Streptomyces r...
| 2780 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5161 | Seems to have no N-terminal signal seq.
|