| ID | SAVERM_6133
| Type | CDS
|
| From | 7377080
| nt length | 945
|
| To | 7378024
| aa length | 314
|
| Gene | rluD
| pI | 6.46
|
| Definition | putative pseudouridylate synthase
| M.W (Da) | 34026
|
| Note | PF00849: RNA pseudouridylate synthase
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2073 putative ribosomal large subunit pseudouridine synthase | 559 | 0.0e+00
|
| sgr | SGR_5432 putative ribosomal large subunit pseudouridine synthase | 579 | 0.0e+00
|
| sam | SAM23877_2162 putative pseudouridylate synthase | 572 | 0.0e+00
|
| scab | SCAB68131 putative pseudouridylate synthase | 577 | 0.0e+00
|
| sace | SACE_5823 ribosomal large subunit pseudouridine synthase | 456 | 1.0e-163
|
| nfar | nfa17870 RNA pseudouridine synthase | 438 | 3.3e-124
|
| mtub | gi|15608678 CONSERVED HYPOTHETICAL PROTEIN MEMBER OF yabO/yceC/yfiI FAMILY [Mycobacterium tuberculosis H37Rv] | 404 | 5.3e-114
|
| cglu | gi|19553337 COG0564:Pseudouridylate synthases, 23S RNA-specific [Corynebacterium glutamicum] | 409 | 1.2e-115
|
| bsub | BG11796 ylyB, ylmL; similar to unknown proteins | 205 | 2.5e-54
|
| ecoli | gi|16130515 23S rRNA pseudouridine synthase [Escherichia coli K12] | 177 | 6.2e-46
|
| paer | PA4544 [gene=rluD] [prot=pseudouridine synthase] [comment=PA4544] | 192 | 3.3e-50
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| PseudoU_synth_2 | 1 | RNA pseudouridylate synthase | 93-247 | 112.3 | 2.1e-32
|
| S4 | 1 | S4 domain | 19-62 | 27.8 | 1.4e-06
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202497536.1 | RluA family pseudouridine synthase [Streptomyces sp. SID5469...
| 1564 | 0.0e+00 |
| WP_005478201.1 | RluA family pseudouridine synthase [Streptomyces bottropensi...
| 1517 | 0.0e+00 |
| WP_217237252.1 | RluA family pseudouridine synthase [Streptomyces sp. AC555_R...
| 1517 | 0.0e+00 |
| WP_046912699.1 | MULTISPECIES: RluA family pseudouridine synthase [Streptomyc...
| 1512 | 0.0e+00 |
| WP_086753955.1 | RluA family pseudouridine synthase [Streptomyces scabiei]
| 1508 | 0.0e+00 |
| WP_190036125.1 | RluA family pseudouridine synthase [Streptomyces fructoferme...
| 1507 | 0.0e+00 |
|
| 1505 | 0.0e+00 |
| WP_071365391.1 | RluA family pseudouridine synthase [Streptomyces colonosanan...
| 1505 | 0.0e+00 |
| WP_210576118.1 | RluA family pseudouridine synthase [Streptomyces sp. GESEQ-4...
| 1505 | 0.0e+00 |
| WP_037693353.1 | RluA family pseudouridine synthase [Streptomyces scabiei] >g...
| 1504 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2555 | Seems to have no N-terminal signal seq.
|