| ID | SAVERM_6178
| Type | CDS
|
| From | 7423820
| nt length | 834
|
| To | 7424653
| aa length | 277
|
| Gene | trpA
| pI | 4.61
|
| Definition | putative tryptophan synthase alpha subunit
| M.W (Da) | 28408
|
| Note | PF00290: Tryptophan synthase alpha chain
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of amino acids & related molecules
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2036 tryptophan synthase alpha subunit | 482 | 3.0e-175
|
| sgr | SGR_5472 putative tryptophan synthase alpha subunit | 454 | 2.0e-164
|
| sam | SAM23877_2123 Tryptophan synthase alpha chain | 486 | 5.0e-177
|
| scab | SCAB68511 putative tryptophan synthase alpha subunit | 482 | 4.0e-175
|
| sace | SACE_5748 tryptophan synthase alpha chain | 259 | 1.0e-87
|
| nfar | nfa18620 trpA tryptophan synthase alpha subunit | 258 | 4.0e-70
|
| mtub | gi|15608751 tryptophan synthase subunit alpha [Mycobacterium tuberculosis H37Rv] | 247 | 5.4e-67
|
| cglu | gi|19554226 COG0159:Tryptophan synthase alpha chain [Corynebacterium glutamicum] | 125 | 2.9e-30
|
| bsub | BG10291 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] | 139 | 1.4e-34
|
| ecoli | gi|16129221 tryptophan synthase subunit alpha [Escherichia coli K12] | 123 | 1.5e-29
|
| paer | PA0035 [gene=trpA] [prot=tryptophan synthase alpha chain] [comment=PA0035] | 195 | 4.4e-51
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Trp_syntA | 1 | Tryptophan synthase alpha chain | 19-271 | 261.0 | 6.7e-78
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498540.1 | tryptophan synthase subunit alpha [Streptomyces sp. SID5469]
| 1271 | 3.3e-176 |
| WP_185124003.1 | tryptophan synthase subunit alpha [Streptomyces sp. TLI_185]...
| 1234 | 2.3e-170 |
| WP_189864490.1 | tryptophan synthase subunit alpha [Streptomyces poonensis] >...
| 1231 | 5.4e-170 |
| GHD97798.1 | tryptophan synthase alpha chain [Streptomyces alanosinicus]
| 1228 | 2.0e-169 |
| WP_060902105.1 | MULTISPECIES: tryptophan synthase subunit alpha [Streptomyce...
| 1221 | 1.8e-168 |
| WP_168490566.1 | MULTISPECIES: tryptophan synthase subunit alpha [Streptomyce...
| 1220 | 2.3e-168 |
| WP_067363840.1 | tryptophan synthase subunit alpha [Streptomyces olivochromog...
| 1220 | 2.7e-168 |
| WP_030990928.1 | tryptophan synthase subunit alpha [Streptomyces sp. NRRL WC-...
| 1220 | 3.4e-168 |
| WP_030642123.1 | MULTISPECIES: tryptophan synthase subunit alpha [Streptomyce...
| 1219 | 3.9e-168 |
| WP_201818292.1 | tryptophan synthase subunit alpha [Streptomyces sp. SP2-10] ...
| 1219 | 4.0e-168 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1077 | Seems to have no N-terminal signal seq.
|