| ID | SAVERM_6220
| Type | CDS
|
| From | 7472920
| nt length | 717
|
| To | 7472204
| aa length | 238
|
| Gene | livF3
| pI | 7.09
|
| Definition | putative branched-chain amino acid ABC transporter ATP-binding protein
| M.W (Da) | 25479
|
| Note | PF00005: ABC transporter
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2012 putative branched chain amino acid transport ATP-binding protein | 436 | 4.0e-158
|
| sgr | SGR_5519 putative branched-chain amino acid ABC transporter ATP-binding protein | 434 | 1.0e-157
|
| sam | SAM23877_2096 leucine/isoleucine/valine transporter subunit, ATP-binding component of ABC superfamily | 437 | 9.0e-159
|
| scab | SCAB68891 putative branched-chain amino acid ABC transporter ATP-binding protein | 435 | 8.0e-158
|
| sace | SACE_4880 ABC transporter ATP-binding protein | 233 | 2.0e-78
|
| nfar | nfa18740 branched-chain amino acid transporter ATP-binding protein | 261 | 3.8e-71
|
| ecoli | gi|49176357 ATP-binding component of leucine transport [Escherichia coli K12] | 239 | 1.6e-64
|
| paer | PA4909 [gene=PA4909] [prot=probable ATP-binding component of ABC transporter] [comment=PA4909] | 226 | 1.1e-60
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ABC_tran | 1 | ABC transporter | 21-165 | 103.6 | 1.1e-29
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498548.1 | ABC transporter ATP-binding protein [Streptomyces sp. SID546...
| 1205 | 2.4e-167 |
| WP_129309696.1 | ABC transporter ATP-binding protein [Streptomyces sp. L2]
| 1191 | 4.8e-165 |
| WP_103839652.1 | ABC transporter ATP-binding protein [Streptomyces sp. Ru72] ...
| 1189 | 7.3e-165 |
| WP_030039481.1 | ABC transporter ATP-binding protein [Streptomyces resistomyc...
| 1188 | 1.3e-164 |
| WP_003989544.1 | ABC transporter ATP-binding protein [Streptomyces viridochro...
| 1188 | 1.4e-164 |
| WP_102913734.1 | ABC transporter ATP-binding protein [Streptomyces cahuitamyc...
| 1187 | 2.0e-164 |
| WP_053671307.1 | ABC transporter ATP-binding protein [Streptomyces sp. NRRL B...
| 1186 | 2.2e-164 |
| WP_189903731.1 | ABC transporter ATP-binding protein [Streptomyces spiralis] ...
| 1186 | 2.4e-164 |
| WP_228622591.1 | ABC transporter ATP-binding protein [Streptomyces sp. JA03] ...
| 1185 | 4.0e-164 |
|
| 1184 | 4.8e-164 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0299 | Seems to have no N-terminal signal seq.
|