| ID | SAVERM_6231
| Type | CDS
|
| From | 7491708
| nt length | 2634
|
| To | 7489075
| aa length | 877
|
| Gene |
| pI | 8.98
|
| Definition | putative ATP-dependent RNA helicase
| M.W (Da) | 92352
|
| Note | PF04408: Helicase associated domain (HA2)
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2000 putative ATP-binding RNA helicase | 669 | 0.0e+00
|
| sgr | SGR_5532 putative ATP-dependent RNA helicase | 1129 | 0.0e+00
|
| sam | SAM23877_2083 ATP-dependent helicase HrpB | 1153 | 0.0e+00
|
| scab | SCAB69041 putative ATP-dependent RNA helicase | 775 | 0.0e+00
|
| sace | SACE_3130 ATP-dependent helicase HrpB | 755 | 0.0e+00
|
| cglu | gi|19551392 COG1643:HrpA-like helicases [Corynebacterium glutamicum] | 475 | 3.3e-135
|
| ecoli | gi|16128141 helicase, ATP-dependent [Escherichia coli K12] | 483 | 2.3e-137
|
| paer | PA3961 [gene=PA3961] [prot=probable ATP-dependent helicase] [comment=PA3961] | 555 | 5.0e-159
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| HrpB_C | 1 | ATP-dependent helicase C-terminal | 730-862 | 168.9 | 6.4e-50
|
| HA2 | 1 | Helicase associated domain (HA2) | 406-466 | 41.1 | 1.6e-10
|
| Helicase_C | 1 | Helicase conserved C-terminal domain | 229-343 | 40.9 | 2.1e-10
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2418 | Seems to have no N-terminal signal seq.
|