| ID | SAVERM_6291
| Type | CDS
|
| From | 7551262
| nt length | 2046
|
| To | 7553307
| aa length | 681
|
| Gene | uvrC
| pI | 6.36
|
| Definition | putative excinuclease ABC subunit C
| M.W (Da) | 76321
|
| Note | PF01541: GIY-YIG catalytic domain
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1953 ABC excision nuclease subunit C | 1189 | 0.0e+00
|
| sgr | SGR_5569 putative excinuclease ABC subunit C | 1111 | 0.0e+00
|
| sam | SAM23877_2028 UvrABC system protein C | 1179 | 0.0e+00
|
| scab | SCAB69651 putative excinuclease ABC subunit C | 1155 | 0.0e+00
|
| sace | SACE_2138 nuclease subunit of the excinuclease ABC complex | 655 | 0.0e+00
|
| nfar | nfa35940 uvrC excision nuclease ABC subunit C | 833 | 0.0e+00
|
| mtub | gi|15608558 excinuclease ABC subunit C [Mycobacterium tuberculosis H37Rv] | 801 | 0.0e+00
|
| cglu | gi|19552804 COG0322:Nuclease subunit of the excinuclease complex [Corynebacterium glutamicum] | 746 | 0.0e+00
|
| bsub | BG10349 uvrC, uvrB; excinuclease ABC subunit C | 353 | 2.4e-98
|
| ecoli | gi|49176168 excinuclease ABC subunit C [Escherichia coli K12] | 323 | 2.3e-89
|
| paer | PA2585 [gene=uvrC] [prot=excinuclease ABC subunit C] [comment=PA2585] | 385 | 5.2e-108
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| UvrC_HhH_N | 1 | UvrC Helix-hairpin-helix N-terminal | 393-568 | 186.8 | 2e-55
|
| GIY-YIG | 1 | GIY-YIG catalytic domain | 19-92 | 43.2 | 3.4e-11
|
| UVR | 1 | UvrB/uvrC motif | 210-242 | 42.0 | 4.6e-11
|
| HHH_5 | 1 | Helix-hairpin-helix domain | 584-632 | 38.3 | 1.4e-09
|
| HHH_2 | 1 | Helix-hairpin-helix motif | 590-636 | 35.3 | 8.3e-09
|
| HHH | 1 | Helix-hairpin-helix motif | 605-631 | 29.6 | 3.5e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_033317928.1 | excinuclease ABC subunit UvrC [Streptomyces yerevanensis]
| 3014 | 0.0e+00 |
| WP_165255868.1 | excinuclease ABC subunit UvrC [Streptomyces scabichelini] >g...
| 3005 | 0.0e+00 |
| WP_189321369.1 | excinuclease ABC subunit UvrC [Streptomyces flaveus] >dbj
| 3001 | 0.0e+00 |
| WP_189187581.1 | excinuclease ABC subunit UvrC [Streptomyces albiflavescens] ...
| 3001 | 0.0e+00 |
| WP_119105035.1 | excinuclease ABC subunit UvrC [Streptomyces sporangiiformans...
| 2997 | 0.0e+00 |
| WP_095933554.1 | excinuclease ABC subunit UvrC [Streptomyces sp. Tue6028] >gb...
| 2989 | 0.0e+00 |
| WP_165342595.1 | excinuclease ABC subunit UvrC [Streptomyces ureilyticus] >gb...
| 2989 | 0.0e+00 |
| WP_099505023.1 | MULTISPECIES: excinuclease ABC subunit UvrC [Streptomyces] >...
| 2986 | 0.0e+00 |
| WP_151478447.1 | excinuclease ABC subunit UvrC [Streptomyces albicerus]
| 2982 | 0.0e+00 |
| WP_121888064.1 | excinuclease ABC subunit UvrC [Streptomyces shenzhenensis] >...
| 2981 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4183 | Seems to have no N-terminal signal seq.
|