| ID | SAVERM_6321
| Type | CDS
|
| From | 7590228
| nt length | 771
|
| To | 7589458
| aa length | 256
|
| Gene |
| pI | 9.66
|
| Definition | putative ABC transporter permease protein
| M.W (Da) | 26552
|
| Note | PF01061: ABC-2 type transporter
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1929 putative integral membrane transport protein | 396 | 8.0e-142
|
| sgr | SGR_5592 putative ABC transporter permease protein | 384 | 4.0e-137
|
| sam | SAM23877_2000 Integral membrane transporter | 402 | 2.0e-144
|
| scab | SCAB69991 putative ABC transporter permease protein | 412 | 4.0e-148
|
| sace | SACE_2170 putative ABC-2 type transport system permease protein | 140 | 2.0e-41
|
| nfar | nfa35660 ABC transporter membrane protein | 196 | 1.3e-51
|
| mtub | gi|15608595 PROBABLE UNIDENTIFIED ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER [Mycobacterium tuberculosis H37Rv] | 202 | 1.4e-53
|
| cglu | gi|19552781 COG0842:ABC-type multidrug transport system, permease component [Corynebacterium glutamicum] | 174 | 4.9e-45
|
| bsub | BG12219 yfiN; ABC-2 type transport system permease protein | 61 | 5.7e-11
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ABC2_membrane | 1 | ABC-2 type transporter | 28-223 | 82.9 | 1.9e-23
|
| ABC2_membrane_3 | 1 | ABC-2 family transporter protein | 64-249 | 81.5 | 5.7e-23
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_143612994.1 | MULTISPECIES: ABC transporter permease [unclassified Strepto...
| 919 | 4.7e-123 |
| WP_075026227.1 | ABC transporter permease [Streptomyces mirabilis] >emb
| 919 | 4.8e-123 |
| GHD53869.1 | transport permease protein [Streptomyces mirabilis]
| 919 | 5.1e-123 |
| WP_143601302.1 | MULTISPECIES: ABC transporter permease [unclassified Strepto...
| 918 | 6.2e-123 |
| WP_054235902.1 | ABC transporter permease [Streptomyces sp. OK228] >gb
| 918 | 6.2e-123 |
| WP_067364220.1 | ABC transporter permease [Streptomyces olivochromogenes] >gb...
| 916 | 1.1e-122 |
| QIY95169.1 | ABC transporter permease [Streptomyces sp. S1D4-11]
| 916 | 1.2e-122 |
| WP_168490447.1 | MULTISPECIES: ABC transporter permease [Streptomyces] >gb
| 916 | 1.2e-122 |
| QDO39384.1 | ABC transporter permease [Streptomyces sp. RLB3-17]
| 916 | 1.2e-122 |
| WP_217571468.1 | ABC transporter permease [Streptomyces sp. GbtcB7]
| 915 | 1.6e-122 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.4270 | Seems to have no N-terminal signal seq.
|