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IDSAVERM_6337 TypeCDS
From7602496 nt length594
To7603089 aa length197
Genesig50 pI8.86
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)21399
NotePF04545: Sigma-70, region 4 AseI frg.F
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
sgrSGR_2795 putative RNA polymerase ECF-subfamily sigma factor2787.0e-97
scabSCAB52511 putative RNA polymerase sigma factor2629.0e-91

*sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4131-17855.23.8e-15

Sigma70_r41Sigma-70, region 4132-18048.05.9e-13

Sigma70_r21Sigma-70 region 231-9645.35.2e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
7451.7e-98
WP_118082731.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7349.3e-97
WP_142151196.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7321.7e-96
WP_094218414.1 sigma-70 family RNA polymerase sigma factor [Streptomyces di... 7304.1e-96
WP_089100898.1 sigma-70 family RNA polymerase sigma factor [Streptomyces hy... 7295.2e-96
WP_145874889.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7295.9e-96
WP_007381208.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sv... 7271.1e-95
WP_150503664.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ch... 7261.5e-95
WP_058926039.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7243.5e-95
WP_093866905.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7225.5e-95

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.2068 Seems to have no N-terminal signal seq.