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IDSAVERM_6385 TypeCDS
From7658855 nt length567
To7658289 aa length188
Genesig52 pI9.74
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)20700
NotePF08281: Sigma-70, region 4 AseI frg.F
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO1876 putative RNA polymerase sigma factor2482.0e-85
samSAM23877_1950 RNA polymerase ECF-subfamily sigma factor3019.0e-107
scabSCAB70611 putative RNA polymerase sigma factor3033.0e-107

*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4109-16051.93.9e-14

Sigma70_r21Sigma-70 region 216-8239.33.7e-10

Sigma70_r41Sigma-70, region 4113-16127.91.1e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_067364406.1 SigE family RNA polymerase sigma factor [Streptomyces olivoc... 7719.0e-103
QIY95111.1 SigE family RNA polymerase sigma factor [Streptomyces sp. S1D4-11... 7701.2e-102
WP_060902186.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7674.2e-102
WP_143601275.1 MULTISPECIES: SigE family RNA polymerase sigma factor [uncla... 7658.2e-102
WP_168490395.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7658.3e-102
WP_190170339.1 SigE family RNA polymerase sigma factor [Streptomyces mirabi... 7631.5e-101
WP_095855357.1 SigE family RNA polymerase sigma factor [Streptomyces sp. Ag... 7631.7e-101
WP_054232293.1 SigE family RNA polymerase sigma factor [Streptomyces sp. OK... 7613.4e-101
WP_189187485.1 SigE family RNA polymerase sigma factor [Streptomyces albifl... 7595.9e-101
WP_189840545.1 SigE family RNA polymerase sigma factor [Streptomyces umbrin... 7362.3e-97

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.1488 Seems to have no N-terminal signal seq.