| ID | SAVERM_6476
| Type | CDS
|
| From | 7756067
| nt length | 1146
|
| To | 7757212
| aa length | 381
|
| Gene |
| pI | 6.16
|
| Definition | putative two-component system sensor kinase
| M.W (Da) | 40693
|
| Note | PF01590: GAF domain
| AseI frg. | S
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | sensors
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1802 putative two-component system sensor kinase (fragment) | 639 | 0.0e+00
|
| sgr | SGR_5694 putative two-component system sensor kinase | 648 | 0.0e+00
|
| sam | SAM23877_1869 Two-component system sensor kinase | 642 | 0.0e+00
|
| scab | SCAB71471 putative two-component system sensor kinase | 643 | 0.0e+00
|
| sace | SACE_2380 putative two-component system sensor kinase | 86 | 3.0e-19
|
| cglu | gi|19554121 COG3920:Sensory transduction histidine kinase [Corynebacterium glutamicum] | 104 | 6.0e-24
|
| bsub | BG14134 yvqE; two-component sensor histidine kinase. potential cognate response regulator is YvqC | 117 | 1.5e-27
|
| ecoli | gi|16129185 nitrate/nitrate sensor, histidine protein kinase acts on NarL regulator [Escherichia coli K12] | 88 | 4.8e-19
|
| paer | PA0600 [gene=PA0600] [prot=probable two-component sensor] [comment=PA0600] | 102 | 5.8e-23
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| GAF_2 | 1 | GAF domain | 23-166 | 79.9 | 2e-22
|
| GAF | 1 | GAF domain | 26-166 | 65.3 | 7.6e-18
|
| HisKA_3 | 1 | Histidine kinase | 183-250 | 63.9 | 1.4e-17
|
| HATPase_c | 1 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 290-379 | 36.6 | 4.9e-09
|
| GAF_3 | 1 | GAF domain | 26-168 | 35.2 | 1.3e-08
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_103844366.1 | GAF domain-containing sensor histidine kinase [Streptomyces ...
| 1645 | 0.0e+00 |
| WP_210883930.1 | GAF domain-containing sensor histidine kinase [Streptomyces ...
| 1645 | 0.0e+00 |
| WP_200399159.1 | GAF domain-containing sensor histidine kinase [Streptomyces ...
| 1644 | 0.0e+00 |
| WP_143636960.1 | GAF domain-containing sensor histidine kinase [Streptomyces ...
| 1643 | 0.0e+00 |
| WP_200423149.1 | GAF domain-containing sensor histidine kinase [Streptomyces ...
| 1642 | 0.0e+00 |
| WP_189770466.1 | GAF domain-containing sensor histidine kinase [Streptomyces ...
| 1638 | 0.0e+00 |
| WP_181862025.1 | GAF domain-containing sensor histidine kinase [Streptomyces ...
| 1634 | 0.0e+00 |
| WP_151479736.1 | GAF domain-containing sensor histidine kinase [Streptomyces ...
| 1632 | 0.0e+00 |
| WP_107017788.1 | GAF domain-containing sensor histidine kinase [Streptomyces ...
| 1631 | 0.0e+00 |
| WP_181659393.1 | GAF domain-containing sensor histidine kinase [Streptomyces ...
| 1630 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| outside | 0.3000 | Seems to have a cleavable N-term signal seq.
|