| ID | SAVERM_6510
| Type | CDS
|
| From | 7799763
| nt length | 792
|
| To | 7800554
| aa length | 263
|
| Gene | scpA
| pI | 4.5
|
| Definition | putative chromosome segregation and condensation protein A
| M.W (Da) | 29590
|
| Note | PF02616: ScpA/B protein
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA packaging & segregation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1770 hypothetical protein | 474 | 2.0e-172
|
| sgr | SGR_5727 conserved hypothetical protein | 404 | 1.0e-144
|
| sam | SAM23877_1828 Chromosome segregation and condensation protein ScpA | 462 | 3.0e-167
|
| scab | SCAB71861 putative chromosome segregation and condensation protein A | 471 | 2.0e-169
|
| sace | SACE_5239 segregation and condensation protein A | 302 | 3.0e-104
|
| nfar | nfa20090 hypothetical protein | 261 | 4.4e-71
|
| mtub | gi|15608847 hypothetical protein Rv1709 [Mycobacterium tuberculosis H37Rv] | 256 | 1.1e-69
|
| cglu | gi|19552638 COG1354:Uncharacterized ACR [Corynebacterium glutamicum] | 254 | 3.8e-69
|
| bsub | BG10524 ypuG; similar to unknown proteins | 90 | 1.2e-19
|
| paer | PA3198 [gene=PA3198] [prot=conserved hypothetical protein] [comment=PA3198] | 93 | 1.7e-20
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SMC_ScpA | 1 | Segregation and condensation protein ScpA | 16-236 | 182.5 | 1.1e-53
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_078936611.1 | MULTISPECIES: segregation/condensation protein A [Streptomyc...
| 1138 | 2.0e-153 |
| WP_126271043.1 | segregation/condensation protein A [Streptomyces aquilus] >g...
| 1071 | 4.0e-145 |
| WP_097262157.1 | segregation/condensation protein A [Streptomyces sp. TLI_55]...
| 1067 | 1.5e-144 |
| WP_171145044.1 | segregation/condensation protein A [Streptomyces sp. S3(2020...
| 1067 | 2.1e-144 |
| OPG04496.1 | segregation/condensation protein A [Streptomyces sp. GKU 895]
| 1066 | 2.4e-144 |
| WP_059196695.1 | segregation/condensation protein A [Streptomyces antibioticu...
| 1063 | 2.0e-143 |
| WP_194083644.1 | segregation/condensation protein A [Streptomyces justiciae] ...
| 1057 | 6.6e-143 |
| NUR65136.1 | segregation/condensation protein A [Streptomyces sp.] >gb
| 1055 | 1.1e-142 |
| WP_232651661.1 | segregation/condensation protein A [Streptomyces sp. NR30] >...
| 1066 | 1.4e-142 |
| WP_200306021.1 | segregation/condensation protein A [Streptomyces adelaidensi...
| 1053 | 2.7e-142 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1362 | Seems to have no N-terminal signal seq.
|