| ID | SAVERM_6678
| Type | CDS
|
| From | 7990430
| nt length | 1512
|
| To | 7991941
| aa length | 503
|
| Gene |
| pI | 5.65
|
| Definition | putative proteasome component
| M.W (Da) | 57016
|
| Note | PF03136: Putative proteasome component
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | protein modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1647 hypothetical protein | 951 | 0.0e+00
|
| sgr | SGR_5857 putative proteasome component | 922 | 0.0e+00
|
| sam | SAM23877_1702 Depupylase | 967 | 0.0e+00
|
| scab | SCAB73451 putative proteasome component | 976 | 0.0e+00
|
| sace | SACE_2249 putative proteasome component | 651 | 0.0e+00
|
| nfar | nfa31740 proteasome component | 623 | 1.0e-179
|
| mtub | gi|15609249 hypothetical protein Rv2112c [Mycobacterium tuberculosis H37Rv] | 613 | 1.0e-176
|
| cglu | gi|19552710 hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 406 | 1.0e-114
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Pup_ligase | 1 | Pup-ligase protein | 5-457 | 636.8 | 1.8e-191
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| PBD00244.1 | proteasome accessory factor A [Streptomyces sp. Ag82_O1-15] >emb
| 2320 | 0.0e+00 |
| SOD87794.1 | proteasome accessory factor A [Streptomyces sp. Ag109_G2-15]
| 2320 | 0.0e+00 |
| GAX52787.1 | proteasome accessory factor PafA2 [Streptomyces olivochromogenes...
| 2318 | 0.0e+00 |
| KPI13836.1 | proteasome accessory factor PafA2 [Actinobacteria bacterium OK006...
| 2316 | 0.0e+00 |
| EPD61426.1 | proteasome accessory factor PafA2 [Streptomyces sp. HGB0020]
| 2315 | 0.0e+00 |
| GGN70220.1 | proteasome accessory factor PafA2 [Streptomyces albiflavescens]
| 2312 | 0.0e+00 |
| PTM94741.1 | proteasome accessory factor A [Streptomyces sp. VMFN-G11Ma]
| 2311 | 0.0e+00 |
| GGJ18850.1 | proteasome accessory factor PafA2 [Streptomyces lacrimifluminis]
| 2311 | 0.0e+00 |
| CCK31315.1 | Pup deamidase/depupylase [Streptomyces davaonensis JCM 4913]
| 2310 | 0.0e+00 |
| GGM00976.1 | proteasome accessory factor PafA2 [Streptomyces fumigatiscleroti...
| 2307 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1574 | Seems to have no N-terminal signal seq.
|