| ID | SAVERM_6722
| Type | CDS
|
| From | 8038442
| nt length | 921
|
| To | 8039362
| aa length | 306
|
| Gene |
| pI | 11.48
|
| Definition | putative LysR-family transcriptional regulator
| M.W (Da) | 31942
|
| Note | PF03466: LysR substrate binding domain
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1616 putative transcriptional regulator | 455 | 2.0e-163
|
| sgr | SGR_5895 putative LysR-family transcriptional regulator | 441 | 6.0e-158
|
| sam | SAM23877_1670 hypothetical protein | 473 | 1.0e-170
|
| scab | SCAB73811 putative LysR-family transcriptional regulator | 475 | 2.0e-171
|
| sace | SACE_3775 LysR-family transcriptional regulator | 259 | 1.0e-86
|
| nfar | nfa43900 transcriptional regulator | 239 | 1.7e-64
|
| mtub | gi|15609419 Probable transcription regulator (lysR family) [Mycobacterium tuberculosis H37Rv] | 249 | 1.2e-67
|
| cglu | gi|19551265 COG0583:Transcriptional regulator [Corynebacterium glutamicum] | 191 | 3.7e-50
|
| bsub | BG10635 ywfK, ipa-89d; similar to transcriptional regulator (LysR family) | 122 | 2.7e-29
|
| ecoli | gi|16130095 putative transcriptional regulator (LysR familiy) [Escherichia coli K12] | 124 | 1.0e-29
|
| paer | PA5382 [gene=PA5382] [prot=probable transcriptional regulator] [comment=PA5382] | 122 | 4.1e-29
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| LysR_substrate | 1 | LysR substrate binding domain | 105-303 | 145.6 | 1.2e-42
|
| HTH_1 | 1 | Bacterial regulatory helix-turn-helix protein, lysR family | 22-78 | 75.7 | 1.8e-21
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_200421307.1 | LysR family transcriptional regulator [Streptomyces sp. Y2F8...
| 963 | 4.7e-128 |
| WP_055492766.1 | LysR family transcriptional regulator [Streptomyces sp. TP-A...
| 955 | 5.4e-127 |
| WP_234518927.1 | LysR family transcriptional regulator [Streptomyces glomerat...
| 953 | 1.2e-126 |
| WP_071366505.1 | LysR family transcriptional regulator [Streptomyces colonosa...
| 950 | 3.2e-126 |
| WP_043438726.1 | LysR family transcriptional regulator [Streptomyces nodosus]...
| 941 | 7.6e-125 |
| WP_059125660.1 | LysR family transcriptional regulator [Streptomyces sp. NRRL...
| 939 | 1.4e-124 |
| WP_189858862.1 | LysR family transcriptional regulator [Streptomyces poonensi...
| 938 | 2.9e-124 |
| WP_220294728.1 | LysR family transcriptional regulator [Streptomyces sp. MBT8...
| 937 | 3.1e-124 |
| WP_164393546.1 | LysR family transcriptional regulator [Streptomyces harenosi...
| 930 | 4.8e-123 |
| WP_161243893.1 | LysR family transcriptional regulator [Streptomyces sp. SID2...
| 929 | 6.3e-123 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1962 | Seems to have no N-terminal signal seq.
|