| ID | SAVERM_6847
| Type | CDS
|
| From | 8173971
| nt length | 615
|
| To | 8174585
| aa length | 204
|
| Gene | rpsD
| pI | 10.68
|
| Definition | putative ribosomal protein S4
| M.W (Da) | 23552
|
| Note | PF01479: S4 domain
| AseI frg. | G2
|
| SignalP v.4.0 | Signal peptide | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1505 30S ribosomal protein S4 | 387 | 4.0e-140
|
| sgr | SGR_6030 putative 30S ribosomal protein S4 | 372 | 4.0e-134
|
| sam | SAM23877_1557 30S ribosomal protein S4 | 390 | 3.0e-141
|
| scab | SCAB75031 putative ribosomal protein S4 | 401 | 2.0e-145
|
| sace | SACE_6804 30S ribosomal protein S4 | 144 | 5.0e-44
|
| nfar | nfa8360 rpsD ribosomal protein S4 | 165 | 3.0e-42
|
| mtub | gi|15610594 30S ribosomal protein S4 [Mycobacterium tuberculosis H37Rv] | 156 | 8.1e-40
|
| cglu | gi|19551798 COG0522:Ribosomal protein S4 and related proteins [Corynebacterium glutamicum] | 160 | 3.1e-41
|
| bsub | BG10372 rpsD; 30S ribosomal protein S4 | 148 | 2.0e-37
|
| ecoli | gi|16131175 30S ribosomal protein S4 [Escherichia coli K12] | 127 | 7.0e-31
|
| paer | PA4239 [gene=rpsD] [prot=30S ribosomal protein S4] [comment=PA4239] | 114 | 8.2e-27
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_S4 | 1 | Ribosomal protein S4/S9 N-terminal domain | 6-91 | 74.1 | 1.2e-20
|
| S4 | 1 | S4 domain | 92-139 | 65.5 | 2.3e-18
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1443 | Seems to have no N-terminal signal seq.
|