| ID | SAVERM_6872
| Type | CDS
|
| From | 8200837
| nt length | 273
|
| To | 8201109
| aa length | 90
|
| Gene | rpoZ
| pI | 4.38
|
| Definition | RNA polymerase omega subunit
| M.W (Da) | 9735
|
| Note | PF01192: RNA polymerase Rpb6
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA initiation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1478 putative RNA polymerase omega subunit | 176 | 5.0e-60
|
| sgr | SGR_6056 putative RNA polymerase omega subunit | 175 | 6.0e-60
|
| sam | SAM23877_1530 DNA-directed RNA polymerase subunit omega | 176 | 5.0e-60
|
| scab | SCAB75281 RNA polymerase omega subunit | 174 | 3.0e-59
|
| sace | SACE_2101 DNA-directed RNA polymerase subunit omega | 120 | 4.0e-38
|
| nfar | nfa36150 rpoZ RNA polymerase omega subunit | 114 | 1.7e-27
|
| mtub | gi|15608529 DNA-directed RNA polymerase omega subunit [Mycobacterium tuberculosis H37Rv] | 113 | 2.1e-27
|
| cglu | gi|19552817 COG1758:DNA-directed RNA polymerase subunit K/omega [Corynebacterium glutamicum] | 101 | 4.4e-24
|
| bsub | BG13387 yloH; DNA-directed RNA polymerase omega chain [EC:2.7.7.6] | 43 | 2.4e-06
|
| ecoli | gi|16131520 DNA-directed RNA polymerase omega subunit [Escherichia coli K12] | 32 | 6.3e-03
|
| paer | PA5337 [gene=rpoZ] [prot=RNA polymerase omega subunit] [comment=PA5337] | 34 | 1.7e-03
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RNA_pol_Rpb6 | 1 | RNA polymerase Rpb6 | 18-80 | 54.5 | 7.4e-15
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_015607348.1 | MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str...
| 451 | 4.6e-57 |
| WP_003982715.1 | MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str...
| 450 | 5.6e-57 |
| WP_200421180.1 | DNA-directed RNA polymerase subunit omega [Streptomyces sp. ...
| 450 | 5.9e-57 |
| WP_156721468.1 | DNA-directed RNA polymerase subunit omega [Streptomyces apoc...
| 450 | 6.9e-57 |
| WP_005319902.1 | MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str...
| 448 | 1.1e-56 |
| WP_030412017.1 | MULTISPECIES: DNA-directed RNA polymerase subunit omega [unc...
| 448 | 1.1e-56 |
| WP_093658262.1 | MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str...
| 448 | 1.4e-56 |
| WP_030620214.1 | MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str...
| 447 | 1.6e-56 |
| WP_149178995.1 | DNA-directed RNA polymerase subunit omega [Streptomyces sp. ...
| 447 | 1.7e-56 |
| WP_030610454.1 | MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str...
| 446 | 2.1e-56 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3701 | Seems to have no N-terminal signal seq.
|