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IDSAVERM_700 TypeCDS
From854938 nt length648
To855585 aa length215
Genesig7 pI7.19
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)23721
NotePF04542: Sigma-70 region 2 AseI frg.A
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
scabSCAB37081 putative RNA polymerase sigma factor2021.0e-66

*scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 224-9248.93.8e-13

Sigma70_r4_21Sigma-70, region 4128-17747.31.1e-12

Sigma70_r41Sigma-70, region 4130-17936.32.8e-09

Sigma70_ECF1ECF sigma factor18-18122.29.8e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_124440606.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8768.4e-118
WP_193507482.1 sigma-70 family RNA polymerase sigma factor [Streptomyces be... 8472.3e-113
WP_062710699.1 RNA polymerase sigma factor [Streptomyces regalis] >gb 8462.8e-113
GGU30435.1 hypothetical protein GCM10010244_65970 [Streptomyces bellus] 8423.4e-112
WP_150483500.1 sigma-70 family RNA polymerase sigma factor [Streptomyces co... 8386.4e-112
WP_059417483.1 sigma-70 family RNA polymerase sigma factor [Streptomyces az... 8376.5e-112
GGT59818.1 hypothetical protein GCM10010256_16330 [Streptomyces coeruleorub... 8336.3e-111
NGO14173.1 RNA polymerase sigma factor [Streptomyces scabichelini] 8151.2e-108
WP_237529089.1 RNA polymerase sigma factor [Streptomyces sp. SID5469] 8078.6e-108
WP_086602958.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sw... 8046.3e-107

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.3150 Seems to have no N-terminal signal seq.