| ID | SAVERM_705
| Type | CDS
|
| From | 860134
| nt length | 633
|
| To | 860766
| aa length | 210
|
| Gene |
| pI | 4.93
|
| Definition | putative TetR-family transcriptional regulator
| M.W (Da) | 21998
|
| Note | PF00440: Bacterial regulatory proteins, tetR family
| AseI frg. | A
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2489 putative tetR-family transcriptional regulator | 115 | 3.0e-33
|
| sgr | SGR_412 putative TetR-family transcriptional regulator | 126 | 3.0e-37
|
| sam | SAM23877_0348 putative tetR-family transcriptional regulator | 129 | 3.0e-38
|
| scab | SCAB62641 putative TetR-family transcriptional regulator | 127 | 2.0e-37
|
| sace | SACE_4948 TetR-family transcriptional regulator | 95 | 2.0e-25
|
| nfar | nfa18020 transcriptional regulator | 113 | 1.1e-26
|
| mtub | gi|15607373 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) [Mycobacterium tuberculosis H37Rv] | 54 | 6.0e-09
|
| bsub | BG14194 yezE; unknown; similar to transcriptional regulator (TetR family) | 62 | 1.9e-11
|
| paer | PA2931 [gene=PA2931] [prot=probable transcriptional regulator] [comment=PA2931] | 78 | 5.2e-16
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TetR_N | 1 | Bacterial regulatory proteins, tetR family | 13-57 | 36.2 | 3.5e-09
|
| TetR_C_13 | 1 | Bacterial transcriptional repressor C-terminal | 84-163 | 34.2 | 1.8e-08
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_190174155.1 | TetR/AcrR family transcriptional regulator [Streptomyces mir...
| 869 | 6.3e-117 |
| WP_097288623.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 862 | 7.1e-116 |
| WP_143599770.1 | MULTISPECIES: TetR/AcrR family transcriptional regulator [un...
| 860 | 1.3e-115 |
| WP_217574050.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 859 | 2.2e-115 |
| WP_181647532.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 853 | 1.7e-114 |
| WP_143606679.1 | MULTISPECIES: TetR/AcrR family transcriptional regulator [un...
| 852 | 2.7e-114 |
| WP_075030020.1 | TetR/AcrR family transcriptional regulator [Streptomyces mir...
| 851 | 2.7e-114 |
| WP_143612028.1 | MULTISPECIES: TetR/AcrR family transcriptional regulator [un...
| 851 | 3.0e-114 |
| WP_144314582.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 850 | 4.4e-114 |
| WP_067379187.1 | TetR/AcrR family transcriptional regulator [Streptomyces oli...
| 850 | 5.4e-114 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4054 | Seems to have no N-terminal signal seq.
|