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IDSAVERM_7068 TypeCDS
From8430823 nt length885
To8431707 aa length294
Genesig55 pI5.56
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)32366
Notesimilar to SCO1263, PF04542: Sigma-70 region 2 AseI frg.D
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO1263 putative ECF-sigma factor4649.0e-168
sgrSGR_6264 putative RNA polymerase ECF-subfamily sigma factor4263.0e-152
samSAM23877_1350 ECF RNA polymerase sigma factor SigJ4735.0e-171
scabSCAB78001 putative RNA polymerase sigma factor4613.0e-166
saceSACE_4776 sigma factor, sigma 70 type, group 4 (ECF)2541.0e-84
nfarnfa22150 sigma factor2692.5e-73
mtubgi|15610464 RNA polymerase sigma-70 factor [Mycobacterium tuberculosis H37Rv]1915.0e-50

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 211-7463.41.1e-17

Sigma70_r4_21Sigma-70, region 4112-16247.11.3e-12

Sigma70_r41Sigma-70, region 4116-16226.53.2e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_237529777.1 RNA polymerase sigma factor SigJ [Streptomyces sp. SID5469] 12719.5e-176
WP_151482359.1 RNA polymerase sigma-70 factor [Streptomyces albicerus] 11966.6e-164
NGO15590.1 RNA polymerase sigma-70 factor [Streptomyces scabichelini] 11931.6e-163
WP_055513235.1 MULTISPECIES: RNA polymerase sigma-70 factor [Streptomyces a... 11913.4e-163
WP_206441016.1 RNA polymerase sigma-70 factor [Streptomyces scabichelini] 11862.7e-162
WP_189184465.1 RNA polymerase sigma-70 factor [Streptomyces albiflavescens]... 11827.0e-162
WP_210891427.1 RNA polymerase sigma-70 factor [Streptomyces sp. BH-SS-21] >... 11801.5e-161
WP_107018753.1 RNA polymerase sigma-70 factor [Streptomyces dioscori] >gb 11792.2e-161
WP_055610840.1 RNA polymerase sigma-70 factor [Streptomyces phaeochromogene... 11722.2e-160
WP_200399722.1 RNA polymerase sigma-70 factor [Streptomyces sp. ZYC-3] >gb 11713.0e-160

PSORT result

LocalizationCertaintyPSORT said
membrane0.2550 Seems to have no N-terminal signal seq.