| ID | SAVERM_7115
| Type | CDS
|
| From | 8474389
| nt length | 756
|
| To | 8475144
| aa length | 251
|
| Gene |
| pI | 6.38
|
| Definition | putative regulatory protein
| M.W (Da) | 27970
|
| Note | PF04397: LytTr DNA-binding domain
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1220 putative regulatory protein | 424 | 5.0e-153
|
| sgr | SGR_723 putative two-component system response regulator | 357 | 2.0e-126
|
| sam | SAM23877_1300 putative regulatory protein | 426 | 8.0e-154
|
| scab | SCAB78501 putative regulatory protein | 444 | 5.0e-161
|
| sace | SACE_0117 response regulator, two-component system | 212 | 3.0e-69
|
| nfar | nfa17970 two-component system response regulator | 238 | 3.8e-64
|
| bsub | BG11953 lytT; two-component response regulator. potential cognate sensor kinase is LytS | 106 | 1.5e-24
|
| ecoli | gi|16130313 putative 2-component transcriptional regulator [Escherichia coli K12] | 95 | 2.3e-21
|
| paer | PA5261 [gene=algR] [prot=alginate biosynthesis regulatory protein AlgR] [comment=PA5261] | 120 | 1.2e-28
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| LytTR | 1 | LytTr DNA-binding domain | 153-245 | 81.2 | 4.6e-23
|
| Response_reg | 1 | Response regulator receiver domain | 5-123 | 64.8 | 6.7e-18
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_075025347.1 | LytTR family DNA-binding domain-containing protein [Streptom...
| 1146 | 7.5e-158 |
| WP_181652312.1 | LytTR family DNA-binding domain-containing protein [Streptom...
| 1146 | 8.3e-158 |
| WP_095856023.1 | MULTISPECIES: LytTR family DNA-binding domain-containing pro...
| 1143 | 2.7e-157 |
| WP_099924068.1 | MULTISPECIES: LytTR family DNA-binding domain-containing pro...
| 1143 | 2.7e-157 |
| WP_067378686.1 | LytTR family DNA-binding domain-containing protein [Streptom...
| 1142 | 3.9e-157 |
| WP_168489792.1 | LytTR family DNA-binding domain-containing protein [Streptom...
| 1137 | 1.7e-156 |
| WP_143607496.1 | MULTISPECIES: LytTR family DNA-binding domain-containing pro...
| 1137 | 2.2e-156 |
| WP_097283732.1 | MULTISPECIES: LytTR family DNA-binding domain-containing pro...
| 1134 | 5.7e-156 |
| WP_212727788.1 | LytTR family DNA-binding domain-containing protein [Streptom...
| 1132 | 1.2e-155 |
| QIY94356.1 | response regulator transcription factor [Streptomyces sp. S1D4-11...
| 1130 | 2.4e-155 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1386 | Seems to have no N-terminal signal seq.
|