| ID | SAVERM_7138
| Type | CDS
|
| From | 8498183
| nt length | 621
|
| To | 8498803
| aa length | 206
|
| Gene |
| pI | 6.64
|
| Definition | putative regulatory protein
| M.W (Da) | 22882
|
| Note | PF01381: Helix-turn-helix
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1200 putative regulatory protein | 329 | 3.0e-117
|
| sgr | SGR_503 putative transcriptional regulator | 275 | 6.0e-96
|
| sam | SAM23877_1281 putative regulatory protein | 313 | 3.0e-111
|
| scab | SCAB78701 putative regulatory protein | 327 | 2.0e-116
|
| sace | SACE_6312 transcriptional regulator, XRE family with cupin sensor | 277 | 5.0e-97
|
| nfar | nfa45130 hypothetical protein | 263 | 8.2e-72
|
| cglu | gi|19554107 COG1396:Predicted transcriptional regulators [Corynebacterium glutamicum] | 41 | 2.1e-05
|
| bsub | BG13497 yobD; similar to transcriptional regulator (phage-related) (Xre family) | 48 | 2.2e-07
|
| paer | PA4499 [gene=PA4499] [prot=probable transcriptional regulator] [comment=PA4499] | 71 | 4.8e-14
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Cupin_2 | 1 | Cupin domain | 123-190 | 58.2 | 4.6e-16
|
| HTH_3 | 1 | Helix-turn-helix | 30-84 | 52.6 | 3.3e-14
|
| HTH_31 | 1 | Helix-turn-helix domain | 26-84 | 50.9 | 1.4e-13
|
| HTH_19 | 1 | Helix-turn-helix domain | 28-85 | 34.7 | 1.2e-08
|
| HTH_26 | 1 | Cro/C1-type HTH DNA-binding domain | 29-85 | 31.1 | 2.2e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_042494639.1 | XRE family transcriptional regulator [Streptomyces sp. SID54...
| 961 | 4.5e-131 |
| WP_189184361.1 | XRE family transcriptional regulator [Streptomyces albiflave...
| 893 | 7.9e-121 |
| GGN51703.1 | hypothetical protein GCM10011579_007840 [Streptomyces albiflaves...
| 893 | 8.3e-121 |
| WP_168517053.1 | XRE family transcriptional regulator [Streptomyces mirabilis...
| 891 | 1.1e-120 |
| WP_097226546.1 | XRE family transcriptional regulator [Streptomyces sp. OV198...
| 887 | 4.8e-120 |
| SOE77678.1 | transcriptional regulator, XRE family with cupin sensor [Strepto...
| 888 | 5.0e-120 |
| WP_054228943.1 | MULTISPECIES: XRE family transcriptional regulator [unclassi...
| 887 | 5.2e-120 |
| WP_225900230.1 | XRE family transcriptional regulator [Streptomyces sp. RLB3-...
| 888 | 5.2e-120 |
| WP_168500891.1 | XRE family transcriptional regulator [Streptomyces sp. RLB1-...
| 887 | 5.5e-120 |
| WP_033278267.1 | XRE family transcriptional regulator [Streptomyces sp. NRRL ...
| 886 | 7.2e-120 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3401 | Seems to have no N-terminal signal seq.
|