| ID | SAVERM_7182
| Type | CDS
|
| From | 8550993
| nt length | 1167
|
| To | 8552159
| aa length | 388
|
| Gene | xylA
| pI | 4.86
|
| Definition | xylose isomerase
| M.W (Da) | 42833
|
| Note | PF01261: Xylose isomerase-like TIM barrel
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | specific pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1169 xylose isomerase | 727 | 0.0e+00
|
| sgr | SGR_1070 putative xylose isomerase | 669 | 0.0e+00
|
| sam | SAM23877_1255 Xylose isomerase | 725 | 0.0e+00
|
| scab | SCAB79861 xylose isomerase | 717 | 0.0e+00
|
| bsub | BG10806 xylA; xylose isomerase [EC:5.3.1.5] | 116 | 2.6e-27
|
| ecoli | gi|16131436 xylose isomerase [Escherichia coli K12] | 96 | 3.1e-21
|
| paer | PA5357 [gene=PA5357] [prot=hypothetical protein] [comment=PA5357] | 29 | 6.4e-01
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| AP_endonuc_2 | 1 | Xylose isomerase-like TIM barrel | 41-265 | 89.7 | 1.6e-25
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1347 | Seems to have no N-terminal signal seq.
|