| ID | SAVERM_7197
| Type | CDS
|
| From | 8571613
| nt length | 882
|
| To | 8572494
| aa length | 293
|
| Gene | rdh
| pI | 4.55
|
| Definition | putative ribitol dehydrogenase
| M.W (Da) | 31337
|
| Note | PF00106: short chain dehydrogenase
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | specific pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| sgr | SGR_5083 putative short-chain dehydrogenase | 139 | 1.0e-40
|
| sam | SAM23877_7094 putative glutathionylspermidine synthase, with NAD(P)-binding Rossmann-fold domain | 492 | 1.0e-178
|
| scab | SCAB80761 putative ribitol dehydrogenase | 524 | 0.0e+00
|
| sace | SACE_4402 short-chain dehydrogenase/reductase SDR | 285 | 2.0e-97
|
| nfar | nfa29990 short chain dehydrogenase | 288 | 3.9e-79
|
| cglu | gi|19553333 COG1028:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Corynebacterium glutamicum] | 279 | 9.8e-77
|
| bsub | BG11060 yhxD; similar to ribitol dehydrogenase [EC:1.-.-.-] | 264 | 4.1e-72
|
| ecoli | gi|16130901 oxidoreductase [Escherichia coli K12] | 274 | 4.5e-75
|
| paer | PA2142 [gene=PA2142] [prot=probable short-chain dehydrogenase] [comment=PA2142] | 252 | 3.2e-68
|
*sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| adh_short_C2 | 1 | Enoyl-(Acyl carrier protein) reductase | 60-289 | 209.0 | 6.8e-62
|
| adh_short | 1 | short chain dehydrogenase | 53-238 | 162.8 | 6.1e-48
|
| KR | 1 | KR domain | 54-229 | 40.9 | 1.9e-10
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.7030 | Seems to have no N-terminal signal seq.
|