| ID | SAVERM_7205
| Type | CDS
|
| From | 8582018
| nt length | 798
|
| To | 8581221
| aa length | 265
|
| Gene | thiD
| pI | 6.42
|
| Definition | putative phosphomethylpyrimidine kinase
| M.W (Da) | 27134
|
| Note | PF02110: Hydroxyethylthiazole kinase family
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of coenzymes & prosthetic groups
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5563 phosphomethylpyrimidine kinase | 367 | 3.0e-130
|
| sgr | SGR_1917 putative phosphomethylpyrimidine kinase | 400 | 6.0e-143
|
| sam | SAM23877_5317 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | 382 | 3.0e-136
|
| scab | SCAB26491 putative phosphomethylpyrimidine kinase | 350 | 3.0e-123
|
| sace | SACE_0510 phosphomethylpyrimidine kinase | 239 | 2.0e-79
|
| nfar | nfa53190 thiD phosphomethylpyrimidine kinase | 266 | 1.4e-72
|
| mtub | gi|15607563 phosphomethylpyrimidine kinase [Mycobacterium tuberculosis H37Rv] | 238 | 3.1e-64
|
| cglu | gi|19552678 COG0352:Thiamine monophosphate synthase [Corynebacterium glutamicum] | 154 | 3.2e-39
|
| bsub | BG13151 yjbV; similar to phosphomethylpyrimidine kinase [EC:2.7.4.7] | 195 | 2.0e-51
|
| ecoli | gi|16130041 phosphomethylpyrimidine kinase [Escherichia coli K12] | 182 | 2.0e-47
|
| paer | PA3975 [gene=thiD] [prot=phosphomethylpyrimidine kinase] [comment=PA3975] | 134 | 8.6e-33
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Phos_pyr_kin | 1 | Phosphomethylpyrimidine kinase | 14-256 | 307.6 | 5.2e-92
|
| PfkB | 1 | pfkB family carbohydrate kinase | 111-234 | 40.6 | 1.7e-10
|
| HK | 1 | Hydroxyethylthiazole kinase family | 81-222 | 21.8 | 9.2e-05
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_073749157.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyr...
| 863 | 2.4e-114 |
| WP_103839748.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyr...
| 854 | 7.1e-113 |
| WP_200420292.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyr...
| 851 | 1.8e-112 |
| WP_189279517.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyr...
| 846 | 9.3e-112 |
| WP_234519358.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyr...
| 844 | 2.0e-111 |
| WP_055494191.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyr...
| 844 | 2.2e-111 |
| WP_161240514.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyr...
| 843 | 3.2e-111 |
| WP_103549495.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyr...
| 842 | 4.2e-111 |
| WP_114242619.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyr...
| 842 | 4.4e-111 |
| WP_059127570.1 | MULTISPECIES: bifunctional hydroxymethylpyrimidine kinase/ph...
| 842 | 5.1e-111 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1638 | Seems to have no N-terminal signal seq.
|