| ID | SAVERM_7304
| Type | CDS
|
| From | 8710649
| nt length | 2154
|
| To | 8712802
| aa length | 717
|
| Gene |
| pI | 4.78
|
| Definition | hypothetical protein
| M.W (Da) | 78065
|
| Note | PF00563: EAL domain, PF00990: GGDEF domain, PF00785: PAC motif
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO0928 hypothetical protein | 1235 | 0.0e+00
|
| sgr | SGR_709 conserved hypothetical protein | 1132 | 0.0e+00
|
| sam | SAM23877_6614 hypothetical protein | 1221 | 0.0e+00
|
| scab | SCAB11501 hypothetical protein | 1222 | 0.0e+00
|
| sace | SACE_7137 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) | 661 | 0.0e+00
|
| nfar | nfa49160 hypothetical protein | 277 | 2.6e-75
|
| mtub | gi|15608494 hypothetical protein Rv1354c [Mycobacterium tuberculosis H37Rv] | 275 | 5.8e-75
|
| ecoli | gi|16129246 RNase II modulator [Escherichia coli K12] | 268 | 7.0e-73
|
| paer | PA0575 [gene=PA0575] [prot=conserved hypothetical protein] [comment=PA0575] | 359 | 5.5e-100
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| EAL | 1 | EAL domain | 460-701 | 239.5 | 3.2e-71
|
| GGDEF | 1 | Diguanylate cyclase, GGDEF domain | 283-439 | 147.4 | 2.7e-43
|
| PAS_9 | 1 | PAS domain | 169-271 | 51.5 | 9e-14
|
| PAS_4 | 1 | PAS fold | 168-273 | 46.4 | 3.6e-12
|
| PAS | 1 | PAS fold | 158-268 | 45.1 | 7.6e-12
|
| PAS_3 | 1 | PAS fold | 180-260 | 41.9 | 8.5e-11
|
| PAS_8 | 1 | PAS domain | 157-204 | 24.8 | 1.5e-05
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498723.1 | EAL domain-containing protein [Streptomyces sp. SID5469]
| 3388 | 0.0e+00 |
| WP_095938026.1 | EAL domain-containing protein [Streptomyces sp. Tue6028] >gb...
| 3178 | 0.0e+00 |
| WP_168531341.1 | EAL domain-containing protein [Streptomyces sp. RPA4-2] >gb
| 3175 | 0.0e+00 |
| WP_075027890.1 | EAL domain-containing protein [Streptomyces mirabilis] >emb
| 3173 | 0.0e+00 |
| WP_028798753.1 | EAL domain-containing protein [Streptomyces sp. 142MFCol3.1]
| 3172 | 0.0e+00 |
| WP_189185630.1 | EAL domain-containing protein [Streptomyces albiflavescens] ...
| 3167 | 0.0e+00 |
| WP_097223836.1 | EAL domain-containing protein [Streptomyces sp. OV198] >emb
| 3164 | 0.0e+00 |
| WP_148009657.1 | EAL domain-containing protein [Streptomyces sp. me109] >lcl
| 3163 | 0.0e+00 |
| WP_168498542.1 | EAL domain-containing protein [Streptomyces sp. RLB1-33] >gb...
| 3163 | 0.0e+00 |
| WP_095851196.1 | EAL domain-containing protein [Streptomyces sp. Ag82_O1-15] ...
| 3162 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2357 | Seems to have no N-terminal signal seq.
|