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IDSAVERM_7424 TypeCDS
From8855573 nt length969
To8856541 aa length322
Genesig58 pI5.09
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)34515
NotePF04542: Sigma-70 region 2 AseI frg.D
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO0803 putative RNA polymerase sigma factor3753.0e-131
samSAM23877_7515 putative RNA polymerase ECF-subfamily sigma factor2844.0e-96
saceSACE_1934 putative RNA polymerase sigma factor3206.0e-110
nfarnfa4970 sigma factor3515.6e-98

*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 239-10351.65.3e-14

Sigma70_r4_21Sigma-70, region 4139-18927.81.3e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_152771195.1 RNA polymerase sigma factor SigJ [Streptomyces spongiae] >gb... 10164.9e-136
NGO06852.1 sigma-70 family RNA polymerase sigma factor [Streptomyces scabich... 10122.3e-135
WP_189185518.1 RNA polymerase sigma factor SigJ [Streptomyces albiflavescen... 10102.8e-135
WP_206439075.1 RNA polymerase sigma factor SigJ [Streptomyces scabichelini] 10085.6e-135
WP_168531529.1 RNA polymerase sigma factor SigJ [Streptomyces sp. RPA4-2] >... 10063.1e-134
GGR32786.1 RNA polymerase sigma factor [Streptomyces aurantiogriseus] 9992.3e-133
WP_030607436.1 RNA polymerase sigma factor SigJ [Streptomyces fulvoviolaceu... 9931.3e-132
WP_059129695.1 RNA polymerase sigma factor SigJ [Streptomyces sp. NRRL F-51... 9912.3e-132
WP_220295665.1 RNA polymerase sigma factor SigJ [Streptomyces sp. MBT84] >l... 9912.4e-132
WP_189940533.1 RNA polymerase sigma factor SigJ [Streptomyces aurantiogrise... 9903.6e-132

PSORT result

LocalizationCertaintyPSORT said
membrane0.2572 Seems to have no N-terminal signal seq.