-- | --

IDSAVERM_898 TypeCDS
From1077479 nt length615
To1076865 aa length204
Genesig10 pI5.31
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)21878
Notesimilar to SCO0866, PF04542: Sigma-70 region 2 AseI frg.A
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO0866 probable ECF-family sigma factor2635.0e-91
sgrSGR_6228 putative RNA polymerase ECF-subfamily sigma factor1883.0e-61
samSAM23877_0552 ECF RNA polymerase sigma factor SigC2714.0e-94
scabSCAB41571 putative RNA polymerase sigma factor2874.0e-100
saceSACE_6625 RNA polymerase sigma factor1717.0e-55
mtubgi|15609206 RNA polymerase sigma-70 factor [Mycobacterium tuberculosis H37Rv]1544.0e-39
paerPA2896 [gene=PA2896] [prot=probable sigma-70 factor, ECF subfamily] [comment=PA2896]801.0e-16

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; mtub, Mycobacterium tuberculosis H37Rv; paer, Pseudomonas aeruginosa;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 241-10658.73.4e-16

Sigma70_r4_21Sigma-70, region 4138-18956.91.1e-15

Sigma70_ECF1ECF sigma factor21-18834.02.3e-08

Sigma70_r41Sigma-70, region 4142-18831.49.4e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_202497297.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7314.4e-96
WP_228625820.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6221.6e-79
WP_141573344.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ip... 6186.7e-79
WP_009332443.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ip... 6177.6e-79
WP_225823936.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6179.7e-79
WP_053707471.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6152.7e-78
WP_225098997.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6117.5e-78
WP_069782511.1 sigma-70 family RNA polymerase sigma factor [Streptomyces fo... 6118.2e-78
WP_071375237.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6108.5e-78
WP_055709307.1 sigma-70 family RNA polymerase sigma factor [Streptomyces pu... 6119.1e-78

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.2294 Seems to have no N-terminal signal seq.