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IDSCAB10871 TypeCDS
From8922986 nt length516
To8922471 aa length171
Genesig pI8.23
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)19371
Note AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO0632 putative RNA polymerase sigma factor2805.0e-77
sgrSGR_5884 putative RNA polymerase ECF-subfamily sigma factor2567.0e-70

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4110-16352.82.1e-14

Sigma70_r21Sigma-70 region 213-7752.23.4e-14

Sigma70_r41Sigma-70, region 4116-16545.14.6e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_041668906.1 RNA polymerase sigma factor SigK [Streptomyces scabiei] 8582.9e-117
WP_037726901.1 RNA polymerase sigma factor SigK [Streptomyces scabiei] >gb 8574.1e-117
WP_059078567.1 RNA polymerase subunit sigma [Streptomyces scabiei] >dbj 8331.8e-113
WP_062026875.1 MULTISPECIES: RNA polymerase subunit sigma [Streptomyces] >g... 7915.5e-107
WP_069769393.1 RNA polymerase subunit sigma [Streptomyces sp. LUP30] 7881.6e-106
WP_028810007.1 RNA polymerase sigma factor SigK [Streptomyces sp. 351MFTsu5... 7871.9e-106
WP_030316086.1 RNA polymerase sigma factor SigK [Streptomyces sp. NRRL B-32... 7871.9e-106
WP_029393857.1 MULTISPECIES: RNA polymerase sigma factor SigK [Streptomyces... 7854.3e-106
WP_093499314.1 RNA polymerase subunit sigma [Streptomyces sp. Ag109_O5-10] ... 7838.5e-106
WP_055718358.1 RNA polymerase subunit sigma [Streptomyces niveiscabiei] 7811.7e-105

PSORT result

LocalizationCertaintyPSORT said
Not Clear