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IDSCAB17181 TypeCDS
From8207139 nt length789
To8207927 aa length262
Genesig pI5.65
Definitionputative RNA polymerase sigma factor M.W (Da)29652
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_1873 putative RNA polymerase sigma factor4939.0e-141
coelSCO6520 putative RNA polymerase sigma factor4515.0e-128

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4207-25575.02.2e-21

Sigma70_r21Sigma-70 region 240-10860.68.1e-17

Sigma70_r4_21Sigma-70, region 4206-24840.61.4e-10

Sigma70_r31Sigma-70 region 3119-17239.83.2e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_059082257.1 RNA polymerase sigma factor SigF [Streptomyces scabiei] >dbj... 13630.0e+00
WP_005482447.1 RNA polymerase sigma factor SigF [Streptomyces bottropensis]... 13300.0e+00
WP_046920084.1 RNA polymerase sigma factor SigF [Streptomyces stelliscabiei... 13220.0e+00
WP_086754266.1 RNA polymerase sigma factor SigF [Streptomyces scabiei] 13150.0e+00
WP_060906037.1 RNA polymerase sigma factor SigF [Streptomyces scabiei] 13110.0e+00
WP_033529778.1 RNA polymerase sigma factor SigF [Streptomyces galbus] 13100.0e+00
WP_086801509.1 RNA polymerase sigma factor SigF [Streptomyces scabiei] 13070.0e+00
WP_086750227.1 RNA polymerase sigma factor SigF [Streptomyces scabiei] 13050.0e+00
WP_060882759.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 13040.0e+00
WP_037704367.1 RNA polymerase sigma factor SigF [Streptomyces scabiei] >gb 13030.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear