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IDSCAB36341 TypeCDS
From6036959 nt length1305
To6038263 aa length434
Genesig pI5.75
Definitionputative RNA polymerase sigma factor M.W (Da)46790
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4987 putative RNA polymerase ECF-subfamily sigma factor6062.0e-174
coelSCO4757 undefined product5416.0e-155
sgrSGR_2792 putative RNA polymerase ECF-subfamily sigma factor2889.0e-79
saceSACE_6398 putative RNA polymerase, sigma-24 subunit, ECF subfamily2863.0e-78
nfarnfa18820 putative sigma factor4192.0e-118

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 232-9740.81.2e-10

Sigma70_r4_21Sigma-70, region 4135-18435.07.8e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_059079023.1 RNA polymerase subunit sigma-24 [Streptomyces scabiei] >dbj 17880.0e+00
WP_046919174.1 RNA polymerase subunit sigma-24 [Streptomyces stelliscabiei]... 16630.0e+00
WP_037694226.1 RNA polymerase subunit sigma-24 [Streptomyces scabiei] >gb 16160.0e+00
WP_060890898.1 RNA polymerase subunit sigma-24 [Streptomyces europaeiscabie... 16140.0e+00
WP_060903813.1 RNA polymerase subunit sigma-24 [Streptomyces europaeiscabie... 16100.0e+00
WP_078935790.1 RNA polymerase subunit sigma-24 [Streptomyces europaeiscabie... 15860.0e+00
WP_086753072.1 RNA polymerase subunit sigma-24, partial [Streptomyces scabi... 15720.0e+00
WP_093789455.1 RNA polymerase subunit sigma-24 [Streptomyces sp. cf124] >em... 15610.0e+00
WP_086805276.1 RNA polymerase subunit sigma-24, partial [Streptomyces scabi... 15580.0e+00
WP_060883601.1 RNA polymerase subunit sigma-24 [Streptomyces sp. 96-12] 15580.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear