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IDSCAB39121 TypeCDS
From5758910 nt length777
To5758134 aa length258
Genebds pI8.99
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)28234
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4735 putative RNA polymerase ECF-subfamily sigma factor4675.0e-133
coelSCO3323 putative RNA polymerase sigma factor3539.0e-99
sgrSGR_4151 RNA polymerase ECF-subfamily sigma factor4713.0e-134
saceSACE_6951 putative RNA polymerase sigma factor2162.0e-57

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 299-16664.64.8e-18

Sigma70_r4_21Sigma-70, region 4198-24951.84.3e-14

Sigma70_r41Sigma-70, region 4204-24938.84.5e-10

Sigma70_ECF1ECF sigma factor82-23937.32.2e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_060889026.1 RNA polymerase subunit sigma-24 [Streptomyces scabiei] 11164.6e-154
WP_020113793.1 MULTISPECIES: RNA polymerase subunit sigma-24 [Streptomyces]... 11157.4e-154
WP_086756017.1 RNA polymerase subunit sigma-24 [Streptomyces scabiei] 11131.3e-153
WP_037688750.1 MULTISPECIES: RNA polymerase subunit sigma-24 [Streptomyces]... 11095.1e-153
WP_030945620.1 RNA polymerase subunit sigma-24 [Streptomyces sp. NRRL S-646... 10826.7e-149
WP_033532723.1 RNA polymerase subunit sigma-24 [Streptomyces galbus] 10821.2e-148
WP_067437585.1 RNA polymerase subunit sigma-24 [Streptomyces lincolnensis] 10773.9e-148
WP_055616602.1 RNA polymerase subunit sigma-24 [Streptomyces phaeochromogen... 10774.7e-148
WP_093746870.1 MULTISPECIES: RNA polymerase subunit sigma-24 [Streptomyces]... 10766.3e-148
WP_079051376.1 RNA polymerase subunit sigma-24 [Streptomyces curacoi] 10741.0e-147

PSORT result

LocalizationCertaintyPSORT said
Not Clear