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IDSCAB45951 TypeCDS
From4996449 nt length654
To4997102 aa length217
Genesig pI10.09
Definitionputative RNA polymerase sigma factor M.W (Da)23252
Note AseI frg.C
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4303 putative RNA polymerase ECF-subfamily sigma factor4007.0e-113
coelSCO3892 putative RNA polymerase sigma factor3853.0e-108
sgrSGR_3687 putative RNA polymerase ECF-subfamily sigma factor3415.0e-95
saceSACE_7382 putative RNA polymerase sigma factor1431.0e-35
nfarnfa56600 putative sigma factor1509.0e-38

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 211-7863.01.5e-17

Sigma70_r4_21Sigma-70, region 4111-16357.57.1e-16

Sigma70_r41Sigma-70, region 4116-16333.52e-08

Sigma70_ECF1ECF sigma factor3-16226.16.3e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_037726048.1 RNA polymerase sigma factor SigM [Streptomyces scabiei] >gb 10931.5e-151
WP_060878706.1 RNA polymerase sigma factor SigM [Streptomyces scabiei] 10896.0e-151
WP_059079582.1 RNA polymerase sigma factor SigM [Streptomyces scabiei] >dbj... 10888.7e-151
WP_086754127.1 RNA polymerase sigma factor SigM [Streptomyces scabiei] 10592.0e-146
WP_005482956.1 RNA polymerase sigma factor SigM [Streptomyces bottropensis]... 10489.0e-145
WP_046913185.1 RNA polymerase sigma factor SigM [Streptomyces stelliscabiei... 10461.8e-144
WP_009332056.1 RNA polymerase sigma factor SigM [Streptomyces ipomoeae] >gb... 10452.9e-144
WP_033530660.1 RNA polymerase sigma factor SigM [Streptomyces galbus] 10444.3e-144
WP_037689648.1 RNA polymerase sigma factor SigM [Streptomyces scabiei] >gb 10435.0e-144
WP_010985728.1 RNA polymerase sigma factor SigM [Streptomyces avermitilis] ... 10281.1e-141

PSORT result

LocalizationCertaintyPSORT said
Not Clear