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IDSCAB51521 TypeCDS
From4417419 nt length582
To4418000 aa length193
Genesig pI8.94
Definitionputative RNA polymerase sigma factor M.W (Da)21417
Note AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3844 putative RNA polymerase ECF-subfamily sigma factor2861.0e-78
coelSCO4409 putative RNA polymerase sigma factor2782.0e-76
sgrSGR_3060 putative RNA polymerase ECF-subfamily sigma factor1562.0e-39

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 229-9445.25.3e-12

Sigma70_r4_21Sigma-70, region 4127-17327.12.3e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_037722604.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces sc... 7735.6e-104
WP_060906858.1 RNA polymerase subunit sigma-70 [Streptomyces scabiei] 7667.8e-103
WP_046919665.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces st... 7362.5e-98
WP_037705360.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces sc... 7353.8e-98
WP_005486174.1 sigma factor [Streptomyces bottropensis] >gb 7344.6e-98
WP_060891281.1 RNA polymerase subunit sigma-70 [Streptomyces europaeiscabie... 7345.8e-98
WP_086748774.1 RNA polymerase subunit sigma-70 [Streptomyces scabiei] 7311.4e-97
WP_046708223.1 RNA polymerase sigma70 [Streptomyces europaeiscabiei] 7302.6e-97
WP_060903951.1 RNA polymerase subunit sigma-70 [Streptomyces europaeiscabie... 7215.3e-96
WP_033525879.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces ga... 7121.3e-94

PSORT result

LocalizationCertaintyPSORT said
Not Clear