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IDSCAB52511 TypeCDS
From4312491 nt length594
To4311898 aa length197
Genesig pI9.13
Definitionputative RNA polymerase sigma factor M.W (Da)21659
Note AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6337 putative RNA polymerase ECF-subfamily sigma factor2444.0e-66
sgrSGR_2795 putative RNA polymerase ECF-subfamily sigma factor2431.0e-65
saceSACE_6402 RNA polymerase ECF-subfamily sigma factor1422.0e-35

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4124-17658.43.8e-16

Sigma70_r21Sigma-70 region 225-9145.83.3e-12

Sigma70_r41Sigma-70, region 4129-17745.53.5e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_060892809.1 RNA polymerase sigma factor [Streptomyces europaeiscabiei] 9091.8e-124
WP_055517374.1 RNA polymerase sigma factor [Streptomyces ossamyceticus] 9049.6e-124
WP_055690673.1 RNA polymerase sigma factor [Streptomyces prasinus] 9031.3e-123
WP_055714577.1 RNA polymerase sigma factor [Streptomyces torulosus] 9003.9e-123
WP_005483438.1 RNA polymerase sigma factor [Streptomyces bottropensis] >gb 8901.1e-121
WP_040254584.1 RNA polymerase sigma factor [Streptomyces albus] >gb 8891.9e-121
WP_046917740.1 RNA polymerase sigma factor [Streptomyces stelliscabiei] >gb... 8206.7e-111
WP_086763601.1 RNA polymerase sigma factor [Streptomyces scabiei] 8206.9e-111
WP_027762395.1 RNA polymerase sigma factor [Streptomyces sp. CNS606] 6704.1e-88
WP_041996699.1 RNA polymerase sigma factor [Streptomyces sp. AcH 505] >gb 6611.1e-86

PSORT result

LocalizationCertaintyPSORT said
Not Clear