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IDSCAB52911 TypeCDS
From4273105 nt length999
To4272107 aa length332
Genesig pI4.83
Definitionputative RNA polymerase sigma factor M.W (Da)37120
Note AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3694 putative RNA polymerase sigma factor6083.0e-175
coelSCO3202 RNA polymerase principal sigma factor5961.0e-171
sgrSGR_4276 RNA polymerase principal sigma factor hrdD5883.0e-169

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r31Sigma-70 region 3179-25591.32.9e-26

Sigma70_r21Sigma-70 region 2100-17073.57.6e-21

Sigma70_r41Sigma-70, region 4269-32152.91.8e-14

Sigma70_r1_21Sigma-70 factor, region 1.234-6743.52.1e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_059085026.1 RNA polymerase subunit sigma [Streptomyces scabiei] >dbj 15080.0e+00
WP_046914721.1 RNA polymerase sigma factor SigB [Streptomyces stelliscabiei... 15060.0e+00
WP_060906902.1 RNA polymerase subunit sigma [Streptomyces scabiei] 15030.0e+00
WP_045556185.1 MULTISPECIES: RNA polymerase sigma factor SigB [Streptomyces... 14940.0e+00
WP_005485977.1 hrdD protein [Streptomyces bottropensis] >gb 14940.0e+00
WP_086804065.1 RNA polymerase subunit sigma [Streptomyces scabiei] 14920.0e+00
WP_033531908.1 RNA polymerase sigma factor SigB [Streptomyces galbus] 14880.0e+00
WP_037705510.1 RNA polymerase sigma factor SigB [Streptomyces scabiei] >gb 14860.0e+00
WP_046704880.1 RNA polymerase sigma factor SigB [Streptomyces europaeiscabi... 14820.0e+00
WP_086755417.1 RNA polymerase subunit sigma [Streptomyces scabiei] 14810.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear