ID	SCAB5471	Type	CDS
From	9532544	nt length	624
To	9531921	aa length	207
Gene	litS	pI	6.53
Definition	putative RNA polymerase ECF-subfamily sigma factor (sig17)	M.W (Da)	22514
Note		AseI frg.	I
SignalP v.4.0	Non-secretory protein | plot	Category

Orthologs (if any)

Pfam search result

	Model	No.	Description	Position (aa)	Score	E-value
	Sigma70_r2	1	Sigma-70 region 2	44-111	57.0	1.1e-15
	Sigma70_r4_2	1	Sigma-70, region 4	143-193	47.8	7.3e-13
	Sigma70_r4	1	Sigma-70, region 4	149-193	43.7	1.3e-11

BLAST search result (top 10 hits)

ID	Description	Score	E-value
WP_037724914.1	RNA polymerase subunit sigma-24 [Streptomyces scabiei] >gb	981	3.8e-135
WP_059078034.1	RNA polymerase subunit sigma-24 [Streptomyces scabiei] >dbj	970	1.6e-133
KND42962.1	RNA polymerase subunit sigma-24 [Streptomyces stelliscabiei]	888	8.1e-121
WP_046917856.1	RNA polymerase subunit sigma-24 [Streptomyces stelliscabiei]	885	1.5e-120
WP_033528785.1	RNA polymerase subunit sigma-24 [Streptomyces galbus]	769	8.7e-103
WP_045561227.1	MULTISPECIES: RNA polymerase subunit sigma-24 [Streptomyces]	737	4.7e-98
WP_086800212.1	RNA polymerase subunit sigma-24 [Streptomyces scabiei]	731	4.1e-97
WP_069767876.1	RNA polymerase subunit sigma-24 [Streptomyces sp. LUP30]	725	4.4e-96
WP_057577077.1	RNA polymerase subunit sigma-24 [Streptomyces sp. Root264] >...	701	1.4e-92
WP_078628906.1	RNA polymerase subunit sigma-24 [Streptomyces sp. 142MFCol3....	659	6.6e-86

PSORT result

Localization	Certainty	PSORT said
Not Clear

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