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IDSCAB85121 TypeCDS
From637684 nt length588
To638271 aa length195
Genesig pI10.15
Definitionputative RNA polymerase sigma factor M.W (Da)21134
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO0194 putative sigma factor2117.0e-56

*coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 223-9062.03e-17

Sigma70_r41Sigma-70, region 4126-17350.59.8e-14

Sigma70_r4_21Sigma-70, region 4119-17247.31.1e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_079109580.1 RNA polymerase subunit sigma-24 [Streptomyces scabiei] 8761.3e-119
WP_079088836.1 RNA polymerase subunit sigma-24 [Streptomyces scabiei] 8761.7e-119
WP_079081941.1 RNA polymerase subunit sigma-24 [Streptomyces scabiei] 8283.7e-112
GAQ65711.1 ECF RNA polymerase sigma factor SigK [Streptomyces scabiei] 8251.4e-111
WP_079024009.1 RNA polymerase subunit sigma-24 [Streptomyces scabiei] 7235.1e-96
WP_060893193.1 RNA polymerase subunit sigma-24 [Streptomyces europaeiscabie... 7173.2e-95
WP_046702498.1 RNA polymerase subunit sigma-24 [Streptomyces europaeiscabie... 7173.4e-95
WP_086752000.1 RNA polymerase subunit sigma-24 [Streptomyces scabiei] 7095.4e-94
WP_079055307.1 RNA polymerase subunit sigma-24 [Streptomyces neyagawaensis] 6583.8e-86
WP_055516003.1 RNA polymerase subunit sigma-24 [Streptomyces ossamyceticus] 6296.4e-82

PSORT result

LocalizationCertaintyPSORT said
Not Clear