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IDSCO0159 TypeCDS
From8519292 nt length969
To8518324 aa length322
Gene pI9.98
Definitionputative ECF sigma factor M.W (Da)35434
NoteSCJ1.08 AseI frg.J
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_424 putative RNA polymerase ECF-subfamily sigma factor4023.0e-113
sgrSGR_240 putative RNA polymerase ECF-subfamily sigma factor4349.0e-123
samSAM23877_0352 putative RNA polymerase ECF-subfamily sigma factor4491.0e-160
scabSCAB3921 putative RNA polymerase sigma factor3232.0e-89
nfarnfa52790 putative sigma factor2024.0e-53

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 217-8060.11.2e-16

Sigma70_r4_21Sigma-70, region 4116-16651.36e-14

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
MYU39690.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 14380.0e+00
KKD15381.1 RNA polymerase sigma 70 [Streptomyces sp. WM6391] >dbj 14300.0e+00
GHB87710.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces anthoc... 14270.0e+00
14250.0e+00
WP_030870955.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 14170.0e+00
WP_003978718.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 14090.0e+00
WP_162495068.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 14070.0e+00
WP_206309173.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 14020.0e+00
WP_193783283.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 13940.0e+00
WP_202492619.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 13160.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear