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IDSCO0527 TypeCDS
From8108493 nt length204
To8108696 aa length67
Gene pI4.45
DefinitionscoF cold shock protein M.W (Da)7178
NoteSCF11.07c AseI frg.F
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
sgrSGR_462 putative cold shock protein1312.0e-32
samSAM23877_7010 cold shock protein-like protein1395.0e-46
scabSCAB87631 putative cold shock protein1303.0e-32

*sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-66105.01.2e-30

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003978336.1 MULTISPECIES: cold-shock protein [Streptomyces] >sp 3493.3e-42
WP_028964611.1 MULTISPECIES: cold-shock protein [Streptomyces] >lcl 3441.7e-41
WP_019330262.1 MULTISPECIES: cold-shock protein [Streptomyces] >lcl 3442.0e-41
WP_030422747.1 MULTISPECIES: cold-shock protein [unclassified Streptomyces]... 3432.3e-41
WP_129291893.1 cold-shock protein [Streptomyces lydicus] 3423.1e-41
GGR62349.1 hypothetical protein GCM10010251_93910 [Streptomyces aurantiogri... 3426.5e-41
GGR63760.1 hypothetical protein GCM10010251_95530 [Streptomyces aurantiogri... 3426.6e-41
WP_059190954.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3407.0e-41
WP_189877651.1 cold-shock protein [Streptomyces viridiviolaceus] >dbj 3408.2e-41
WP_093655093.1 cold-shock protein [Streptomyces wuyuanensis] >emb 3399.1e-41

PSORT result

LocalizationCertaintyPSORT said
Not Clear