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IDSCO0864 TypeCDS
From7755569 nt length597
To7756165 aa length198
Gene pI4.94
Definitionprobable ECF-family sigma factor M.W (Da)21664
NoteSCM2.17c AseI frg.M
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
sgrSGR_6228 putative RNA polymerase ECF-subfamily sigma factor1931.0e-50
saceSACE_6625 RNA polymerase sigma factor1423.0e-35

*sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 231-9658.73.2e-16

Sigma70_r4_21Sigma-70, region 4128-17955.72.5e-15

Sigma70_ECF1ECF sigma factor12-18023.53.7e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
EFD71092.1 ECF family RNA polymerase sigma factor [Streptomyces lividans TK2... 7852.3e-104
WP_011027400.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 7823.5e-104
WP_030869213.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 7781.8e-103
WP_164277042.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ru... 7503.5e-99
WP_166625278.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7434.0e-98
WP_109030640.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ru... 7417.3e-98
MYS50338.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 7401.2e-97
WP_161167594.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7381.9e-97
GHA78559.1 RNA polymerase sigma factor [Streptomyces tendae] 7297.8e-96
WP_189744533.1 sigma-70 family RNA polymerase sigma factor [Streptomyces te... 7279.0e-96

PSORT result

LocalizationCertaintyPSORT said
Not Clear