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IDSCO0866 TypeCDS
From7753936 nt length642
To7754577 aa length213
Gene pI5.4
Definitionprobable ECF-family sigma factor M.W (Da)22981
NoteSCM2.19c AseI frg.M
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_898 putative RNA polymerase ECF-subfamily sigma factor2423.0e-65
samSAM23877_0552 ECF RNA polymerase sigma factor SigC2686.0e-93
scabSCAB41571 putative RNA polymerase sigma factor2654.0e-72

*avm, Streptomyces avermitilis; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4145-19658.24.1e-16

Sigma70_r21Sigma-70 region 249-11355.72.9e-15

Sigma70_r41Sigma-70, region 4149-19628.38.3e-07

Sigma70_ECF1ECF sigma factor30-19725.41e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011027402.1 sigma-70 family RNA polymerase sigma factor [Streptomyces co... 8792.1e-118
WP_003977993.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8714.0e-117
WP_202492722.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8513.7e-114
WP_166625276.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8298.3e-111
NEA78260.1 sigma-70 family RNA polymerase sigma factor [Actinospica acidiphi... 7342.3e-96
WP_190162334.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ma... 7317.6e-96
WP_058917534.1 sigma-70 family RNA polymerase sigma factor [Actinospica aci... 7273.2e-95
WP_086681692.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ga... 7273.3e-95
WP_136238325.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 7256.4e-95
WP_019521402.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 7247.3e-95

PSORT result

LocalizationCertaintyPSORT said
Not Clear