-- | --

IDSCO1263 TypeCDS
From7332797 nt length888
To7333684 aa length295
Gene pI5.87
Definitionputative ECF-sigma factor M.W (Da)32235
Note2SCG18.10c AseI frg.G
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_7068 putative RNA polymerase ECF-subfamily sigma factor4422.0e-125
sgrSGR_6264 putative RNA polymerase ECF-subfamily sigma factor4232.0e-119
samSAM23877_1350 ECF RNA polymerase sigma factor SigJ4941.0e-179
scabSCAB78001 putative RNA polymerase sigma factor4422.0e-125

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 210-7363.21.3e-17

Sigma70_r4_21Sigma-70, region 4112-16250.31.2e-13

Sigma70_r41Sigma-70, region 4116-16229.92.6e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
NEC36887.1 RNA polymerase sigma-70 factor [Streptomyces rubrogriseus] 12878.0e-178
MYS69948.1 RNA polymerase sigma-70 factor [Streptomyces sp. SID5926] 12832.6e-177
WP_109030257.1 RNA polymerase sigma-70 factor [Streptomyces rubrogriseus] 12815.3e-177
WP_203696981.1 RNA polymerase sigma-70 factor [Streptomyces rubrogriseus] 12782.3e-176
WP_087810585.1 RNA polymerase sigma-70 factor [Streptomyces sp. CS113] >gb 12417.5e-171
WP_161376951.1 MULTISPECIES: RNA polymerase sigma-70 factor [unclassified S... 12372.6e-170
WP_159324735.1 RNA polymerase sigma-70 factor [Streptomyces tendae] 12364.2e-170
WP_003977567.1 MULTISPECIES: RNA polymerase sigma-70 factor [Streptomyces] ... 12356.5e-170
WP_193484719.1 MULTISPECIES: RNA polymerase sigma-70 factor [Streptomyces] ... 12331.3e-169
WP_226026958.1 RNA polymerase sigma-70 factor [Streptomyces hyderabadensis] 12331.6e-169

PSORT result

LocalizationCertaintyPSORT said
Not Clear