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IDSCO1478 TypeCDS
From7086690 nt length273
To7086962 aa length90
GenerpoZ pI4.38
Definitionputative RNA polymerase omega subunit M.W (Da)9677
NoteSC9C5.02c AseI frg.L
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6872 RNA polymerase omega subunit1566.0e-40
sgrSGR_6056 putative RNA polymerase omega subunit1773.0e-46
samSAM23877_1530 DNA-directed RNA polymerase subunit omega1792.0e-61
scabSCAB75281 RNA polymerase omega subunit1764.0e-46
saceSACE_2101 DNA-directed RNA polymerase subunit omega1096.0e-26
nfarnfa36150 putative RNA polymerase omega subunit1041.0e-24

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_Rpb61RNA polymerase Rpb618-8054.57.1e-15

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003977348.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4551.1e-57
WP_003988945.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4541.7e-57
WP_005319902.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4522.8e-57
WP_018570191.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [unc... 4523.2e-57
WP_067025681.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4513.8e-57
WP_003982715.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4513.9e-57
WP_019325064.1 DNA-directed RNA polymerase subunit omega [Streptomyces sp. ... 4514.7e-57
WP_028814064.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4514.7e-57
WP_106415143.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [unc... 4514.8e-57
WP_033321800.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4505.3e-57

PSORT result

LocalizationCertaintyPSORT said
Not Clear