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IDSCO1723 TypeCDS
From6823920 nt length558
To6824477 aa length185
Gene pI6.53
Definitionputative RNA polymerase sigma factor M.W (Da)20824
NoteSCI11.12c AseI frg.I
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6582 putative RNA polymerase ECF-subfamily sigma factor2822.0e-77
samSAM23877_1778 ECF RNA polymerase sigma factor SigK3081.0e-109
scabSCAB72451 putative RNA polymerase sigma factor2852.0e-78
nfarnfa8890 putative sigma factor1431.0e-35

*avm, Streptomyces avermitilis; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 232-9364.64.8e-18

Sigma70_r41Sigma-70, region 4130-17950.78.3e-14

Sigma70_r4_21Sigma-70, region 4124-17749.81.8e-13

Sigma70_ECF1ECF sigma factor10-17027.52.3e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
AIJ16726.1 RNA polymerase sigma factor SigK [Streptomyces lividans TK24] >gb... 7264.5e-96
AXL87818.1 RNA polymerase subunit sigma [Streptomyces sp. CB09001] 7111.2e-93
WP_003977103.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 6995.5e-92
WP_164278253.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ru... 6901.4e-90
MYS78571.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 6873.9e-90
WP_162833537.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6874.4e-90
WP_109034110.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ru... 6831.6e-89
WP_193783115.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6831.7e-89
WP_202492918.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 6771.2e-88
WP_219179851.1 ECF RNA polymerase sigma factor SigK [Streptomyces sp. AC542... 6727.9e-88

PSORT result

LocalizationCertaintyPSORT said
Not Clear