ID	SCO2465	Type	CDS
From	6013181	nt length	1191
To	6014371	aa length	396
Gene	hrdA	pI	8.64
Definition	RNA polymerase principal sigma factor	M.W (Da)	43805
Note	SC7A8.04c	AseI frg.	C
SignalP v.4.0	Non-secretory protein | plot	Category

Orthologs (if any)

Pfam search result

	Model	No.	Description	Position (aa)	Score	E-value
	Sigma70_r3	1	Sigma-70 region 3	242-318	94.7	2.3e-27
	Sigma70_r2	1	Sigma-70 region 2	163-232	83.2	7.2e-24
	Sigma70_r4	1	Sigma-70, region 4	331-384	70.5	5.6e-20
	Sigma70_r1_2	1	Sigma-70 factor, region 1.2	98-131	57.0	1.2e-15

BLAST search result (top 10 hits)

ID	Description	Score	E-value
WP_003976339.1	MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >sp...	1473	0.0e+00
WP_202492453.1	MULTISPECIES: RNA polymerase sigma factor [Streptomyces]	1465	0.0e+00
CAA37172.1	unnamed protein product [Streptomyces coelicolor A3(2)]	1463	0.0e+00
AIJ15987.1	RNA polymerase principal sigma factor HrdA [Streptomyces lividans...	1438	0.0e+00
WP_109033041.1	RNA polymerase sigma factor [Streptomyces rubrogriseus] >gb	1430	0.0e+00
NEC34807.1	RNA polymerase sigma factor [Streptomyces rubrogriseus]	1428	0.0e+00
WP_203696352.1	RNA polymerase sigma factor [Streptomyces rubrogriseus]	1419	0.0e+00
WP_030181126.1	RNA polymerase sigma factor [Streptomyces violaceorubidus]	1415	0.0e+00
PPS81821.1	RNA polymerase principal sigma factor HrdA [Streptomyces sp. MH60...	1413	0.0e+00
WP_107487798.1	MULTISPECIES: RNA polymerase sigma factor [unclassified Stre...	1407	0.0e+00

PSORT result

Localization	Certainty	PSORT said
Not Clear

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