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IDSCO2742 TypeCDS
From5678363 nt length948
To5679310 aa length315
Gene pI4.97
Definitionputative sigma factor M.W (Da)34745
NoteSCC57A.13c AseI frg.C
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
samSAM23877_2768 Sigma-70 family RNA polymerase sigma factor4493.0e-160
saceSACE_4776 sigma factor, sigma 70 type, group 4 (ECF)4223.0e-119
nfarnfa22150 putative sigma factor3679.0e-103

*sam, Streptomyces ambofaciens ATCC 23877; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 233-9551.17.4e-14

Sigma70_r4_21Sigma-70, region 4127-17846.12.5e-12

Sigma70_r41Sigma-70, region 4133-17831.11.1e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011028554.1 RNA polymerase sigma-70 factor [Streptomyces coelicolor] >gb... 14750.0e+00
WP_003976058.1 MULTISPECIES: RNA polymerase sigma-70 factor [Streptomyces] ... 14710.0e+00
WP_106517207.1 MULTISPECIES: RNA polymerase sigma-70 factor [Streptomyces] ... 14640.0e+00
WP_109032825.1 MULTISPECIES: RNA polymerase sigma-70 factor [Streptomyces] ... 14640.0e+00
WP_191849545.1 RNA polymerase sigma-70 factor [Streptomyces anthocyanicus] ... 14600.0e+00
WP_030866191.1 RNA polymerase sigma-70 factor [Streptomyces violaceoruber] 14570.0e+00
WP_121716187.1 RNA polymerase sigma-70 factor [Streptomyces sp. E5N91] 14550.0e+00
MYS69246.1 RNA polymerase sigma-70 factor [Streptomyces sp. SID5926] 14520.0e+00
WP_093456188.1 MULTISPECIES: RNA polymerase sigma-70 factor [unclassified S... 14520.0e+00
WP_202493115.1 MULTISPECIES: RNA polymerase sigma-70 factor [Streptomyces] 13960.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear