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IDSCO3068 TypeCDS
From5306814 nt length915
To5305900 aa length304
Genesig15 pI4.68
Definitionsig15 putative RNA polymerase sigma factor M.W (Da)33780
NoteSCE25.09 AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3490 putative RNA polymerase sigma factor4831.0e-137
sgrSGR_4466 putative RNA polymerase sigma factor4831.0e-137
samSAM23877_3119 RNA polymerase sigma-F factor5800.0e+00
scabSCAB54751 putative RNA polymerase sigma factor5139.0e-147

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4250-29870.36.2e-20

Sigma70_r31Sigma-70 region 3163-22963.71.1e-17

Sigma70_r21Sigma-70 region 283-15259.02.6e-16

Sigma70_r4_21Sigma-70, region 4249-29642.53.5e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
EOY48131.1 RNA polymerase sigma factor SigB [Streptomyces lividans 1326] >gb... 14170.0e+00
WP_003975743.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 14160.0e+00
GGL58037.1 RNA polymerase sigma factor [Streptomyces anthocyanicus] >dbj 14140.0e+00
MYS70670.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomyces s... 14130.0e+00
WP_104632295.1 RNA polymerase sigma factor SigF [Streptomyces sp. MH60] >gb... 14120.0e+00
WP_030189974.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 14110.0e+00
WP_031047015.1 RNA polymerase sigma factor SigF [Streptomyces sp. NRRL F-56... 14100.0e+00
OWA05622.1 B/F/G family RNA polymerase sigma-70 factor [Streptomyces sp. CS1... 14100.0e+00
WP_179235618.1 RNA polymerase sigma factor SigF [Streptomyces sp. CS113] 14100.0e+00
WP_061444344.1 RNA polymerase sigma factor SigF [Streptomyces sp. CCM_MD201... 14090.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear