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IDSCO3892 TypeCDS
From4384221 nt length711
To4384931 aa length236
GenesigT pI7.77
Definitionputative RNA polymerase sigma factor M.W (Da)25102
NoteSCH24.14c AseI frg.H
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4303 putative RNA polymerase ECF-subfamily sigma factor3379.0e-94
sgrSGR_3687 putative RNA polymerase ECF-subfamily sigma factor3407.0e-95
samSAM23877_3765 putative RNA polymerase sigma factor4133.0e-149
scabSCAB45951 putative RNA polymerase sigma factor3853.0e-108
saceSACE_7382 putative RNA polymerase sigma factor1247.0e-30
nfarnfa56600 putative sigma factor1448.0e-36

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 230-9762.81.7e-17

Sigma70_r4_21Sigma-70, region 4130-18255.43.2e-15

Sigma70_r41Sigma-70, region 4135-18232.93.1e-08

Sigma70_ECF1ECF sigma factor15-18127.42.4e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011029295.1 MULTISPECIES: RNA polymerase sigma factor SigM [Streptomyces... 11021.4e-151
EFD68120.1 RNA polymerase sigma factor SigM [Streptomyces lividans TK24] >gb... 11002.6e-151
WP_030863481.1 MULTISPECIES: RNA polymerase sigma factor SigM [Streptomyces... 10984.3e-151
WP_037666519.1 MULTISPECIES: RNA polymerase sigma factor SigM [Streptomyces... 10984.4e-151
CAA07449.1 sigma factor [Streptomyces coelicolor A3(2)] 10977.0e-151
WP_159324934.1 RNA polymerase sigma factor SigM [Streptomyces tendae] 10812.3e-148
WP_161379661.1 RNA polymerase sigma factor SigM [Streptomyces sp. SID5914] ... 10793.9e-148
WP_121711655.1 RNA polymerase sigma factor SigM [Streptomyces sp. E5N91] 10794.7e-148
WP_189740444.1 RNA polymerase sigma factor SigM [Streptomyces tendae] >dbj 10779.3e-148
WP_164459321.1 MULTISPECIES: RNA polymerase sigma factor SigM [Streptomyces... 10733.8e-147

PSORT result

LocalizationCertaintyPSORT said
Not Clear